Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1375 ATGGAGAGAAGAGGGGATGTGGCTCTCTTTTGTTTAGCTTTGTTCTTCTTGTGGACTTCAGTGAATGGTTTGCTTTCTCCTAAAGGTGTCAACTATGAAGTTCAAGCTCTGATGAGCATTAAGAACTCTCTGGTGGATCCTCATTCTGTCTTAAATAACTGGGATGCTGATGCTGTGGATCCTTGCAACTGGGCTATGGTCACTTGTTCTTCTGATCATTTTGTGATTGCCCTAGGGATTCCAAGCCAAAGTATATCTGGCATTCTATCATCAAGCATAGGCAACTTAACGAACCTCCAGACTGTGCTCCTGCAGGATAATAATATAACAGGACCAATTCCCTCTGAGATTGGAAGGCTCCAAAAGCTTCAAACTCTTGATCTCTCTGTCAATTTCTTCATTGGTCAACTTCCAGATTCTCTTTCCCACATGAAGGGTCTCAATTATTTGCGGCTAAACAATAACAGTCTCACTGGACCAATTCCTTCCTCTTTGGCTAACATGACTCAGCTTGCCTTTCTGGATATCTCTTATAATAACTTGAGGGGGCCTGTACCAAGATTAAATGCAAAAACATTCAATATTGTAGGCAATCCTCAGATATGTGCCGCTGGAGTTGAGCAGAACTGCTTCAGAACAACACCAATTCCTTCTGTTCCGAATAATTCTGGAGATTCACAATCCTCCAAAAGACCAAAGAGTCACAAAGTTGCCTTGGCGTTTGCTTCAACCTTAAGCTGCGTATGCTTACTAATTCTGGGACTTGGCTTCCTCATCTGGTGGAGACAAAGATATAACAAGCAAATATTCTTTGATGTTAGTGAACAACAACGTGAAGAGGTTTGCCTTGGAAACCTCAAGAGGTTCCATTTCAGAGAACTTCAGCTTGCTACAAATAACTTCAGCAACAAGAACTTGATTGGCAAAGGTGGTTTTGGAAATGTCTACAAAGGGTATCTCCAAGATGGTACAGTTATAGCAGTAAAAAGGCTTAAAGATGGTAATGCCATTGGAGGTCTCACCCAATTCCAGACTGAAGTTGAGATGATCAGCTTAGCCGTCCATCGGAATCTTCTTCGCCTGTATGGATTCTGCATGACAGCTACAGAGAGGCTCTTGGTTTATCCCTACATGTCAAATGGAAGTGTTGCTTCCCGTCTAAAAGCCAAGCCAGCTCTGGACTGGCCTACGAGGAAGAGAATAGCTTTAGGAGCTGCAAGAGGTTTGCTATATTTGCACGAGCAGTGTGATCCAAAGATTATTCATAGGGATGTGAAGGCAGCAAATATCTTGCTTGATGATTATTGTGAGGCTGTGGTGGGAGATTTTGGGTTGGCAAAGCTGTTAGACCACAGGGATTCACATGTGACAACAGCAGTGAGAGGCACTGTGGGGCACATAGCACCTGAGTATCTCTCAACAGGCCAATCTTCTGAGAAAACAGATGTGTTTGGGTTTggaattcttcttcttgaacTGATATCTGGCCAAAGAACTCTTGAGTTTGGGAAAGCAGCAAACCAGAAAGGAGCCATGCTAGACTGGGTGAAGAAAATCCAtcaagagaagaaaattgaCTCGTTAGTTGACAAGGacctaaaaaaaaactatgatagGATTGAGCTTGATGAGATTGTTCAAGTGGCTCTTTTATGTACTCAGTACCTTCCAAGCCACAGACCCAAGATGTCTGAAGTGGTTAGGATGCTTGAAGGAGATGGTCTTGCAGAGAAATGGGAAGCCTCGCAGAGAGCTGAATCCACAAGAAGTAGAGGAAACGAACTCTCCTCCTCAGAGCGCTACTCTGATCTCACTGATGACTCTTCATTACTTGCCCAAGCAATGGAACTTTCTGGACCAAGATGA 1866 0.4234 MERRGDVALFCLALFFLWTSVNGLLSPKGVNYEVQALMSIKNSLVDPHSVLNNWDADAVDPCNWAMVTCSSDHFVIALGIPSQSISGILSSSIGNLTNLQTVLLQDNNITGPIPSEIGRLQKLQTLDLSVNFFIGQLPDSLSHMKGLNYLRLNNNSLTGPIPSSLANMTQLAFLDISYNNLRGPVPRLNAKTFNIVGNPQICAAGVEQNCFRTTPIPSVPNNSGDSQSSKRPKSHKVALAFASTLSCVCLLILGLGFLIWWRQRYNKQIFFDVSEQQREEVCLGNLKRFHFRELQLATNNFSNKNLIGKGGFGNVYKGYLQDGTVIAVKRLKDGNAIGGLTQFQTEVEMISLAVHRNLLRLYGFCMTATERLLVYPYMSNGSVASRLKAKPALDWPTRKRIALGAARGLLYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELISGQRTLEFGKAANQKGAMLDWVKKIHQEKKIDSLVDKDLKKNYDRIELDEIVQVALLCTQYLPSHRPKMSEVVRMLEGDGLAEKWEASQRAESTRSRGNELSSSERYSDLTDDSSLLAQAMELSGPR 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1375 621 Gene3D Transferase(Phosphotransferase) domain 1 378 590 - -
Ssu2g1375 621 Gene3D Ribonuclease Inhibitor 30 212 IPR032675 -
Ssu2g1375 621 Gene3D Phosphorylase Kinase; domain 1 270 377 - -
Ssu2g1375 621 ProSitePatterns Protein kinases ATP-binding region signature. 307 329 IPR017441 GO:0005524
Ssu2g1375 621 Pfam Leucine rich repeat 122 181 IPR001611 GO:0005515
Ssu2g1375 621 SUPERFAMILY Protein kinase-like (PK-like) 280 571 IPR011009 -
Ssu2g1375 621 ProSiteProfiles Protein kinase domain profile. 301 556 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g1375 621 MobiDBLite consensus disorder prediction 578 621 - -
Ssu2g1375 621 MobiDBLite consensus disorder prediction 588 612 - -
Ssu2g1375 621 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 6 621 - -
Ssu2g1375 621 Pfam Leucine rich repeat N-terminal domain 31 70 IPR013210 -
Ssu2g1375 621 Pfam Protein kinase domain 302 568 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g1375 621 ProSitePatterns Serine/Threonine protein kinases active-site signature. 420 432 IPR008271 GO:0004672|GO:0006468
Ssu2g1375 621 PANTHER PROTEIN NSP-INTERACTING KINASE 2-LIKE 6 621 - -
Ssu2g1375 621 SMART serkin_6 301 556 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g1375 621 SUPERFAMILY L domain-like 32 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1375 Ssu-Chr2 57782671 57786559 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1375 8 621 Receptor kinase-like Gene Family AT5G16000 73.440 0.0 932
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Ssu2g1375 Pkinase 3.4e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1375 - - gmx:100790194 1139.41