Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1358 ATGAGCCCCCTAATCAGACTCGCCTTAGCAATTAACTTGATTTCCAGTTCCTATACCTTCAGAATCTTCATGAAGTACTTAACTCTCCTTCACACCCTTCTTAAATGgacattatatttcattttccaCCGATTGTACTATCCCTTATTCCGCACCCTCTTTGGAGAAGAGCTCGGCACGTGCCACCACGTGCCCACCTATGTGTCACGGGAAGATGTAGAAGATTGCGCCGTGTGTCTCCGCAAAATGGGAGAAAGAGATGAGATTATAACGCTGCGGTGTGAACATGTCTTTCACAGCGATTGTTTGGATACTTGGATTGGTTTCAACAACGCCACTTGCCCTCTTTGCAGAGAATCAGTGGGTCCAAAAAGGGGTATCGGACAGTTAGTTAGTGCTCAAGTTCTGCTATTTGAGTCTTCTTCTATCAATACGGATGATTGTGAAATAAACTGGTTACGATGA 465 0.4301 MSPLIRLALAINLISSSYTFRIFMKYLTLLHTLLKWTLYFIFHRLYYPLFRTLFGEELGTCHHVPTYVSREDVEDCAVCLRKMGERDEIITLRCEHVFHSDCLDTWIGFNNATCPLCRESVGPKRGIGQLVSAQVLLFESSSINTDDCEINWLR 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1358 154 SUPERFAMILY RING/U-box 75 127 - -
Ssu2g1358 154 ProSiteProfiles Zinc finger RING-type profile. 76 118 IPR001841 -
Ssu2g1358 154 PANTHER RING ZINC FINGER PROTEIN-RELATED 66 130 - -
Ssu2g1358 154 PANTHER EMB|CAB89405.1-RELATED 66 130 - -
Ssu2g1358 154 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 58 126 IPR013083 -
Ssu2g1358 154 SMART ring_2 76 117 IPR001841 -
Ssu2g1358 154 Pfam Ring finger domain 75 118 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1358 Ssu-Chr2 57390665 57391129 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1358 68 145 C3H Transcription Factor Family AT1G63840 42.500 7.11e-12 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1358 K16282 - vvi:104878972 100.523