Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1356 ATGTTGTTTTGCTCCAATTTTGTTGAATCATCACTGCAGGCACCATCCATGCCTCCAAGCTTCAACACACTTGACTACTCTCTAGACCACCACCACAATCTGTATCCACCAAATCATCAACAACACCAACACCTCATGAAGTTCCAAACCTCGGGTGATGAAAACAACAATGGATCAATGGTGGATTACATGCccccaacaccaccaccacatGGTTTTTATGGTACTAGTACTGGCACAACATCCTATGATAAACTCAGTTTTGCAGATGTGATGCAGTTTGCAGATTTTGGACCCAAGTTGGccctaaaccaaacaaaaaactgTGAAGAATCTGGAATAGACCCAGTTTACTTCCTCAAGTTTCCTGTGTTAAACGACAAGATGGAGGAGGAGCAGAACCTGATGGTGAGTAATGACCCTGACGATGAAGCAGAAAATCATGATGAGGGGTTTAACATGATGAGTGTGGAGTATAAGTCAAGGGTGGGAGAAGAGGGAATGATGATGAGAGAAGATGAAGAGACTCGGGTTTCCGATGACAACAACTCGGTGCAGATTCGGTTTCTTGGTCATGAAGAGCCACAGAAGAAGTGTGCAGTGCAGGAGAACAAGAACAAGAGGAAGAGACCAAGaactgttaagacaaatgaagaGGTTGAGAGCCAGCGCATGACTCACATAGCGGTTGAAAGAAACCGTAGGAAGCAAATGAATGAGCATCTTCGTGTCCTTAGATCTCTCATGCCTGGTTCATACGTCCAAAGGGGTGATCAAGCTTCTATAATTGGGGGGGCTATAGAGTTTGTGAGGGAATTGGAGCAACTTCTTCAGTGTTTGGAATCGCAAAAGAGGAGAAGACTACTTGGAGAAGCTCAAGCAAGACAAGTTGGGGATCCCTCTCTTGCGGCACAACAGCCTCCATTCTTTCCACCTTTGCCTACTCCAAATGAGCAGATGAAGCTTGTGGAGTTGGAGACCGGACTTCGCGAAGAAACCGCGGAGAGCAAGTCTTGTTTGGCTGATGTTGAAGTGAAGCTTCTAGGATTTGACGCCATGATCAAAATCTTATCAAGAAGGAGGCCAGGACAGTTGATCAAGACCATTGCTGCCCTTGAAGATCTGCAACTAATCATCCTTCACACCAACATCACCACCATTGAACAAACAGTTCTTTATTCATTCAATGTCAAGGTGGCTAGTGATTCAAGGTTCACCGCAGAAGATATAGCCAGCTCGGTTCAGcagatattcaattttatccATGCAAACACTAGCATGTGA 1284 0.4245 MLFCSNFVESSLQAPSMPPSFNTLDYSLDHHHNLYPPNHQQHQHLMKFQTSGDENNNGSMVDYMPPTPPPHGFYGTSTGTTSYDKLSFADVMQFADFGPKLALNQTKNCEESGIDPVYFLKFPVLNDKMEEEQNLMVSNDPDDEAENHDEGFNMMSVEYKSRVGEEGMMMREDEETRVSDDNNSVQIRFLGHEEPQKKCAVQENKNKRKRPRTVKTNEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRLLGEAQARQVGDPSLAAQQPPFFPPLPTPNEQMKLVELETGLREETAESKSCLADVEVKLLGFDAMIKILSRRRPGQLIKTIAALEDLQLIILHTNITTIEQTVLYSFNVKVASDSRFTAEDIASSVQQIFNFIHANTSM 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1356 427 PANTHER TRANSCRIPTION FACTOR FAMA 42 427 IPR044283 GO:0003700|GO:0010052
Ssu2g1356 427 Gene3D - 220 296 IPR036638 GO:0046983
Ssu2g1356 427 SMART finulus 228 279 IPR011598 GO:0046983
Ssu2g1356 427 CDD bHLH_AtFAMA_like 225 292 - -
Ssu2g1356 427 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 222 288 IPR036638 GO:0046983
Ssu2g1356 427 Pfam Helix-loop-helix DNA-binding domain 223 274 IPR011598 GO:0046983
Ssu2g1356 427 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 222 273 IPR011598 GO:0046983
Ssu2g1356 427 MobiDBLite consensus disorder prediction 199 224 - -
Ssu2g1356 427 CDD ACT_UUR-ACR-like 353 417 - -
Ssu2g1356 427 PANTHER TRANSCRIPTION FACTOR FAMA 42 427 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1356 Ssu-Chr2 57284982 57287080 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1356 50 427 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G24140 60.775 2.57e-152 436
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu2g1356 HLH 9.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1356 - - pvu:PHAVU_003G033900g 697.197