Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Ssu2g1352 | ATGGATCTAAAGATTGCAAAAAGGActgaacaaattcaaattggTGGGAGTGGGACAACGTCAACGTGTGTGTACTGGCTAGCTGGGAGATGCAACAGGAACCCTTGCAGGTTCTTGCACACGTCACCACATTCTGCTTATTATCATGCCAGCACTCCTTGCAGACATGCAAGAAAGCCCCGTTCTTCCTCTAATAATAACTCAAAGACAGCGCTGATTGGACATAGTGAATGTGGAAAAAATATTGTCAAGCCTTCTCACAAATCATCACCTAATATTTGCAAATACTGGACAAATGGCAACTGTGTATATGGTGACGGGTGTCGAAATATACATTCATGGTTTTCCGGTGATCGGCTTTGCACATTAGCAAAACTTCAAGAACACAAGAAGGTTATCACTGGCATTGCACTTCCAGTTGGATCCGACAAACTCTATTCTGGTAGCACTGATGGGACAGTTCGGACATGGGACTGTCATACTGGTCGGTGCACTAATGTGATAAAGCTTCGTGCCGAAGTTACCTCTTTGATCAGCGAGGGGCCATGGATTTTTGTTGGTCTACAGAATGCTGTCAAGGCTTGGAATATTCAGACTTCATCAGAGTTTACTCTTGATGGACCTAAAGGACAAGTCCTTGCCATGATTGTTGGCAATGACATACTTTTTGCTGGAACAGAGGATGGTGTCATTGTTGCATGGAGAGGCAGCTCTGAATCTAACTCCCCTTTTGAATTGGTTGCGTCACTAATTGGCCACTCTAAAGCTGTGGTTTGCCTTACTGTTGGACGCAAGATGCTGTACTCAGGGTCCATGGACAAAAGCATAAAGGCATGTCTATTGTCAGTTTGGGACATGGATTCATTACAGTGTAAAATGACACTTAATGGGCACACTGCCGTGGTCACATCCCTTATTTGCTGGGACCATTATTTGTTGTCAAGTTCATCTGACTGCACAATTAAGGTCTGGGCTGCCACTGAGGAGGGAACTTTGGAAGTGATGTACACGCACACTGAGGAAAATGGTGTTGTTGCACTTTCTGGGATGACTGATGCCGAAGACAACCATATATTGTTTTGCTCATGCAAAGACAACTCAGTTCGTTTGTATGAATTGCCGTCATTTTCAGAGAGGGGTCGTTTATTTTCAAGGAAGGAGGTTGGAACGTTTGAGTTAGGTCCTGGTGGGCTCTTCTTCACTGGAGACGGGACCGGTTTGCTGACAGTGTGGAAATGGTTGGATGAACTCAAGGTGGCATCCTCTTGA | 1269 | 0.4429 | MDLKIAKRTEQIQIGGSGTTSTCVYWLAGRCNRNPCRFLHTSPHSAYYHASTPCRHARKPRSSSNNNSKTALIGHSECGKNIVKPSHKSSPNICKYWTNGNCVYGDGCRNIHSWFSGDRLCTLAKLQEHKKVITGIALPVGSDKLYSGSTDGTVRTWDCHTGRCTNVIKLRAEVTSLISEGPWIFVGLQNAVKAWNIQTSSEFTLDGPKGQVLAMIVGNDILFAGTEDGVIVAWRGSSESNSPFELVASLIGHSKAVVCLTVGRKMLYSGSMDKSIKACLLSVWDMDSLQCKMTLNGHTAVVTSLICWDHYLLSSSSDCTIKVWAATEEGTLEVMYTHTEENGVVALSGMTDAEDNHILFCSCKDNSVRLYELPSFSERGRLFSRKEVGTFELGPGGLFFTGDGTGLLTVWKWLDELKVASS | 422 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Ssu2g1352 | 422 | Gene3D | - | 281 | 421 | IPR015943 | GO:0005515 | |
Ssu2g1352 | 422 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 126 | 158 | - | - | |
Ssu2g1352 | 422 | SMART | c3hfinal6 | 88 | 114 | IPR000571 | GO:0046872 | |
Ssu2g1352 | 422 | SMART | c3hfinal6 | 19 | 42 | IPR000571 | GO:0046872 | |
Ssu2g1352 | 422 | Gene3D | - | 17 | 113 | - | - | |
Ssu2g1352 | 422 | PANTHER | - | 16 | 421 | IPR044715 | - | |
Ssu2g1352 | 422 | Gene3D | - | 114 | 280 | IPR015943 | GO:0005515 | |
Ssu2g1352 | 422 | ProSiteProfiles | Zinc finger C3H1-type profile. | 17 | 43 | IPR000571 | GO:0046872 | |
Ssu2g1352 | 422 | ProSiteProfiles | Zinc finger C3H1-type profile. | 88 | 115 | IPR000571 | GO:0046872 | |
Ssu2g1352 | 422 | SUPERFAMILY | WD40 repeat-like | 87 | 412 | IPR036322 | GO:0005515 | |
Ssu2g1352 | 422 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 126 | 167 | IPR001680 | GO:0005515 | |
Ssu2g1352 | 422 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 295 | 334 | IPR001680 | GO:0005515 | |
Ssu2g1352 | 422 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 48-LIKE ISOFORM X1 | 16 | 421 | - | - | |
Ssu2g1352 | 422 | SMART | WD40_4 | 243 | 285 | IPR001680 | GO:0005515 | |
Ssu2g1352 | 422 | SMART | WD40_4 | 288 | 325 | IPR001680 | GO:0005515 | |
Ssu2g1352 | 422 | SMART | WD40_4 | 198 | 235 | IPR001680 | GO:0005515 | |
Ssu2g1352 | 422 | SMART | WD40_4 | 375 | 412 | IPR001680 | GO:0005515 | |
Ssu2g1352 | 422 | SMART | WD40_4 | 119 | 158 | IPR001680 | GO:0005515 | |
Ssu2g1352 | 422 | SMART | WD40_4 | 331 | 372 | IPR001680 | GO:0005515 | |
Ssu2g1352 | 422 | Pfam | WD domain, G-beta repeat | 123 | 158 | IPR001680 | GO:0005515 | |
Ssu2g1352 | 422 | Pfam | WD domain, G-beta repeat | 290 | 324 | IPR001680 | GO:0005515 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Ssu2g1352 | Ssu-Chr2 | 57143720 | 57145969 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Ssu2g1352 | 80 | 375 | Eukaryotic Initiation Factors Gene Family | AT2G46290 | 23.423 | 2.41e-08 | 53.5 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Ssu2g1352 | - | - | gmx:100787799 | 593.578 |