Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1352 ATGGATCTAAAGATTGCAAAAAGGActgaacaaattcaaattggTGGGAGTGGGACAACGTCAACGTGTGTGTACTGGCTAGCTGGGAGATGCAACAGGAACCCTTGCAGGTTCTTGCACACGTCACCACATTCTGCTTATTATCATGCCAGCACTCCTTGCAGACATGCAAGAAAGCCCCGTTCTTCCTCTAATAATAACTCAAAGACAGCGCTGATTGGACATAGTGAATGTGGAAAAAATATTGTCAAGCCTTCTCACAAATCATCACCTAATATTTGCAAATACTGGACAAATGGCAACTGTGTATATGGTGACGGGTGTCGAAATATACATTCATGGTTTTCCGGTGATCGGCTTTGCACATTAGCAAAACTTCAAGAACACAAGAAGGTTATCACTGGCATTGCACTTCCAGTTGGATCCGACAAACTCTATTCTGGTAGCACTGATGGGACAGTTCGGACATGGGACTGTCATACTGGTCGGTGCACTAATGTGATAAAGCTTCGTGCCGAAGTTACCTCTTTGATCAGCGAGGGGCCATGGATTTTTGTTGGTCTACAGAATGCTGTCAAGGCTTGGAATATTCAGACTTCATCAGAGTTTACTCTTGATGGACCTAAAGGACAAGTCCTTGCCATGATTGTTGGCAATGACATACTTTTTGCTGGAACAGAGGATGGTGTCATTGTTGCATGGAGAGGCAGCTCTGAATCTAACTCCCCTTTTGAATTGGTTGCGTCACTAATTGGCCACTCTAAAGCTGTGGTTTGCCTTACTGTTGGACGCAAGATGCTGTACTCAGGGTCCATGGACAAAAGCATAAAGGCATGTCTATTGTCAGTTTGGGACATGGATTCATTACAGTGTAAAATGACACTTAATGGGCACACTGCCGTGGTCACATCCCTTATTTGCTGGGACCATTATTTGTTGTCAAGTTCATCTGACTGCACAATTAAGGTCTGGGCTGCCACTGAGGAGGGAACTTTGGAAGTGATGTACACGCACACTGAGGAAAATGGTGTTGTTGCACTTTCTGGGATGACTGATGCCGAAGACAACCATATATTGTTTTGCTCATGCAAAGACAACTCAGTTCGTTTGTATGAATTGCCGTCATTTTCAGAGAGGGGTCGTTTATTTTCAAGGAAGGAGGTTGGAACGTTTGAGTTAGGTCCTGGTGGGCTCTTCTTCACTGGAGACGGGACCGGTTTGCTGACAGTGTGGAAATGGTTGGATGAACTCAAGGTGGCATCCTCTTGA 1269 0.4429 MDLKIAKRTEQIQIGGSGTTSTCVYWLAGRCNRNPCRFLHTSPHSAYYHASTPCRHARKPRSSSNNNSKTALIGHSECGKNIVKPSHKSSPNICKYWTNGNCVYGDGCRNIHSWFSGDRLCTLAKLQEHKKVITGIALPVGSDKLYSGSTDGTVRTWDCHTGRCTNVIKLRAEVTSLISEGPWIFVGLQNAVKAWNIQTSSEFTLDGPKGQVLAMIVGNDILFAGTEDGVIVAWRGSSESNSPFELVASLIGHSKAVVCLTVGRKMLYSGSMDKSIKACLLSVWDMDSLQCKMTLNGHTAVVTSLICWDHYLLSSSSDCTIKVWAATEEGTLEVMYTHTEENGVVALSGMTDAEDNHILFCSCKDNSVRLYELPSFSERGRLFSRKEVGTFELGPGGLFFTGDGTGLLTVWKWLDELKVASS 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1352 422 Gene3D - 281 421 IPR015943 GO:0005515
Ssu2g1352 422 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 126 158 - -
Ssu2g1352 422 SMART c3hfinal6 88 114 IPR000571 GO:0046872
Ssu2g1352 422 SMART c3hfinal6 19 42 IPR000571 GO:0046872
Ssu2g1352 422 Gene3D - 17 113 - -
Ssu2g1352 422 PANTHER - 16 421 IPR044715 -
Ssu2g1352 422 Gene3D - 114 280 IPR015943 GO:0005515
Ssu2g1352 422 ProSiteProfiles Zinc finger C3H1-type profile. 17 43 IPR000571 GO:0046872
Ssu2g1352 422 ProSiteProfiles Zinc finger C3H1-type profile. 88 115 IPR000571 GO:0046872
Ssu2g1352 422 SUPERFAMILY WD40 repeat-like 87 412 IPR036322 GO:0005515
Ssu2g1352 422 ProSiteProfiles Trp-Asp (WD) repeats profile. 126 167 IPR001680 GO:0005515
Ssu2g1352 422 ProSiteProfiles Trp-Asp (WD) repeats profile. 295 334 IPR001680 GO:0005515
Ssu2g1352 422 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 48-LIKE ISOFORM X1 16 421 - -
Ssu2g1352 422 SMART WD40_4 243 285 IPR001680 GO:0005515
Ssu2g1352 422 SMART WD40_4 288 325 IPR001680 GO:0005515
Ssu2g1352 422 SMART WD40_4 198 235 IPR001680 GO:0005515
Ssu2g1352 422 SMART WD40_4 375 412 IPR001680 GO:0005515
Ssu2g1352 422 SMART WD40_4 119 158 IPR001680 GO:0005515
Ssu2g1352 422 SMART WD40_4 331 372 IPR001680 GO:0005515
Ssu2g1352 422 Pfam WD domain, G-beta repeat 123 158 IPR001680 GO:0005515
Ssu2g1352 422 Pfam WD domain, G-beta repeat 290 324 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1352 Ssu-Chr2 57143720 57145969 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1352 80 375 Eukaryotic Initiation Factors Gene Family AT2G46290 23.423 2.41e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1352 - - gmx:100787799 593.578