Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1351 ATGTTTGTGTTTTCTAGAGCATATATTATGGATCTAAAGATTGCAAAAAGGActgaacaaattcaaattggTGGGAGTGGGACAACGTCAACGTGTGTGTACTGGCTAGCTGGGAGATGCAACAGGAACCCTTGCAGGTTCTTGCACACGTCACCACATTCTGCTTATTATCATGCCAGCACTCCTTGCAGACATGCAAGAAAGCCCCGTTCTTCCTCTGATAATAACTCAAAGACAGCGCGGATTGGAAATAGTGAATGTGGAAAAAATATTGTCAAGCCTTCTCACAAATCATCACCTAATATTTGCAAATACTGGACAAATGGCAACTGTGTATATGGTGACGGGTGTCGAAATATACATTCATGGTTTTCCGATGATCGGCTTTGCACATTAGCAAAACTTCAAGAACACAAGAAGGTTATCACTGGCATTGCACTTCCAGTTGGATCCGACAAACTCTATTCTGGCAGCACTGATGGGACAGTTCGGACATGGGACTGTCATACTGGTCGGTGCACTAATGTGATAAAGCTTCGTGCCGAAGTTACCTCTTTGATCAGCGAGGGGCCATGGATTTTTGTTGGTCTACAGAATGCTGTCAAGGCTTGGAATATTCAGACTTCATCAGAGTTTACTCTTGATGGACCTAAAGGACAAGTCCTTGCCATGATTGTTGGCAATGACATACTTTTTGCTGGAACAGAGGATGGTGTCATTGTTGCATGGAGAGGCAGCTCTGCAGCTAACTCCCCTTTTGAATTGGTTGCGTCACTAATTGGCCACTCTAAAGCTGTGGTTTGCCTTACTGTTGGACGCAAGATGCTGTACTCAGGGTCCATGGACAAAAGCATAAAGGCATGTCTATTGTCAGTTTGGGACATGGATTCATTACAGTGTAAAATGACACTTAATGGGCACACTGACGTGGTCACATCCCTTATTTGCTGGGACCATTATTTGTTGTCAAGTTCATCTGACTGCACAATTAAGGTCTGGGCTGCCACTGAGGAGGGAACTTTGGAAGTGATGTACACGCACACTGAGGAAAATGGTGTTGTTGCACTTTCTGGGATGACTGATGCCGAAGACAACCATATATTGTTTTGCTCATGCAAAGACAACTCAGTTCGTTTGTATGAATTGCCGTCAGAGGGGTCGTTTATTTTTAAGGAAGAGGTTGGAACGTTTGAGCTAGGTCCTGGTGGGCTCTTCTTCACTGGAGACGGGACCGGTTTGCTGACAGTGTGGAAATGGTTGGATGAACTCAAGGTGGCATCCTCTTGA 1287 0.4413 MFVFSRAYIMDLKIAKRTEQIQIGGSGTTSTCVYWLAGRCNRNPCRFLHTSPHSAYYHASTPCRHARKPRSSSDNNSKTARIGNSECGKNIVKPSHKSSPNICKYWTNGNCVYGDGCRNIHSWFSDDRLCTLAKLQEHKKVITGIALPVGSDKLYSGSTDGTVRTWDCHTGRCTNVIKLRAEVTSLISEGPWIFVGLQNAVKAWNIQTSSEFTLDGPKGQVLAMIVGNDILFAGTEDGVIVAWRGSSAANSPFELVASLIGHSKAVVCLTVGRKMLYSGSMDKSIKACLLSVWDMDSLQCKMTLNGHTDVVTSLICWDHYLLSSSSDCTIKVWAATEEGTLEVMYTHTEENGVVALSGMTDAEDNHILFCSCKDNSVRLYELPSEGSFIFKEEVGTFELGPGGLFFTGDGTGLLTVWKWLDELKVASS 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1351 428 PANTHER - 25 427 IPR044715 -
Ssu2g1351 428 SMART WD40_4 207 244 IPR001680 GO:0005515
Ssu2g1351 428 SMART WD40_4 340 381 IPR001680 GO:0005515
Ssu2g1351 428 SMART WD40_4 252 294 IPR001680 GO:0005515
Ssu2g1351 428 SMART WD40_4 297 334 IPR001680 GO:0005515
Ssu2g1351 428 SMART WD40_4 128 167 IPR001680 GO:0005515
Ssu2g1351 428 ProSiteProfiles Trp-Asp (WD) repeats profile. 135 176 IPR001680 GO:0005515
Ssu2g1351 428 Pfam WD domain, G-beta repeat 299 333 IPR001680 GO:0005515
Ssu2g1351 428 Pfam WD domain, G-beta repeat 132 167 IPR001680 GO:0005515
Ssu2g1351 428 ProSiteProfiles Zinc finger C3H1-type profile. 97 124 IPR000571 GO:0046872
Ssu2g1351 428 ProSiteProfiles Zinc finger C3H1-type profile. 26 52 IPR000571 GO:0046872
Ssu2g1351 428 Gene3D - 12 62 - -
Ssu2g1351 428 SUPERFAMILY WD40 repeat-like 96 418 IPR036322 GO:0005515
Ssu2g1351 428 SMART c3hfinal6 28 51 IPR000571 GO:0046872
Ssu2g1351 428 SMART c3hfinal6 97 123 IPR000571 GO:0046872
Ssu2g1351 428 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 135 167 - -
Ssu2g1351 428 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 48-LIKE ISOFORM X1 25 427 - -
Ssu2g1351 428 Gene3D - 253 427 IPR015943 GO:0005515
Ssu2g1351 428 Gene3D - 65 252 IPR015943 GO:0005515
Ssu2g1351 428 ProSiteProfiles Trp-Asp (WD) repeats profile. 304 343 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1351 Ssu-Chr2 57110564 57112839 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1351 89 384 Eukaryotic Initiation Factors Gene Family AT2G46290 22.892 2.88e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1351 - - gmx:100787799 578.17