Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1350 ATGGTGGACTTGGGGAGGAGAAGAATGAGGGGTGAAAGGAGAAGGAAGTTGCGTCTTAGCAAGATCTATTCATTTGCATGTGGGAAACAATCTCTCAAGGGGGATCATTCACAGATTGGAGGGAGAGGGTATTCCAGGGTGGTGTTTTGCAATGAGCCAGAGAGCTTTGAGGCTGGGATAAGGGGTTATGCTGATAATTCTGTGAGGTCCACAAAGTATACTCTTGCTACTTTCTTGCCTAAGTCACTTTTTGAGCAGTTCAGGAGGGTggctaatttctattttttggtaaCTGGCATCTTGGCCTTCACAGAGCTTGCTCCTTATACAGCTGTCAGTGCTATCATTCCTCTGATTATTATTACTGGGGCAACTATGGTCAAAGAGGGCATTGAAGATTGGCAAAGAAAAAAGCAGGATATTAAGGTGAATAATAGAAGAGTTAAAGTGCATACAGGGCATGGAACTTTTGAATATACTGAGTGGAAGAATCTGAAGGTGGGGCATATAGTGAAGATAATGAAGGATGAATTCTTCCCTGCTGACCTCGTACTGCTTTCATCCAGTTATGAGGATGCATTCTGCTATGTTGAGACCATGAACTTGGATGGGGAGACAAATTTGAAGTTAAAACAAGGGTTGGAAGTAACTTCTTCCTTACATGAGGACTCTCATTTCAGTGATTTTAAAGCTACAATCAAATGTGAAGACCCAAATGcaaatttatattcatttgttGGGAGCATGGAGTTTGAAGAGCAACAGTATCCCCTTTCTCCTCAGCAACTTCTTCTGAGAGACTCTAAACTTCGTAACACGGACTACATATTTGGAGTTGTCATCTTCACCGGTCATGACACGAAGGTTATTCAAAATTCCACTGATCCCCCTTCAAAGAGAAGCAAGGTTGAGAAGAAGATGGATAGGGTTATCTACTTCTTGTTCTGTATTTTGTTTCTAATGGCATTTGTTGGATCTATTTTCTTTGGCATTGCAACTAAAGATGACTTGGACAATGGATTGATGAAAAGGTGGTACCTAAGACCAGATGACTCAACAATTTTCTTTGATCCTAAAAGGGCACCTGCTGCTGctatatttcattgtttgacAGCCTTAATGTTATATGGTTTCTTCATTCCCATCTCATTGTATGTTTCAATAGAAATTGTCAAAGTCCTTCAGAGCATGTTCATCAATCAAGATATCCATATGTACTATGAAGATGCAAACAAACCTGCACATGCCCGTACTTCAAACTTGAATGAGGAACTTGGCCAAGTTGACACAATACTTTCTGACAAAACTGGAACTCTGACCTGCAACTCAATGGAGTTCATCAAATGTTCCATTGCTGGGGTAGCTTATGGCTGTGGTGTTACAGAGGTTGAGAGGGCaatgaatagaaaaaatggTACTCCTTTGATTGACAACATAGGGGAATCTCCTGACAGAAATGCACCCATCAAAGGTTTTAACTTTTCAGATGAAAGGATAATGAATGGAAAATGGGTTAATGAGCCTTATGCAAATGTTATCCAGAATTTTTTCCGCTTGTTGGCAATCTGCCATACAGCCATACCAGAAGTTGATGAAGACACAGGAAATGTCTCATATGAGACTGAATCTCCAGATGAATCAGCATTTGTGATTGCAGCAAGAGAGCTTGGTTTTGAATTCTATAAAAGGGCTCAGACTAGTCTATCCATGTATGAATTGGATCCAGTTTCTGGTGACAAAATTGAAAGgACGTACAAACTTCTCAATGTTTTAGAATTCAATAGCTCGAGGAAGCGAATGTCAGTGATAGTGAGAGATgaagaaggaagaattttaCTACTCTGTAAAGGTGCTGACAGTGTCATGTTTGAGAGGCTTGCCAAGGATGGGAGGGAGTTTGCAGAGAAAACCTCAGAACATGTGCATGAATATGCTGATGCAGGTCTAAGGACCCTGATCCTGGCATATCGTGAACTTGATGAAAACCAATACAAGGagtttgataataaattttctcaAGCGAAAAACTCAATTAGTGAAGATCGGGAAACACTGATTGAGGAAGTTTCAGATAAGATTGAGAGGAATCTAATTCTTCTTGGTGCCACTGCTGTAGAGGACAAGCTCCAACATGGGGTTCCTGATTGCATTGACAAGCTTGCTCAAGCTGGAATTAAGATCTGGGTTTTGACTGGGGATAAAATGGAGACTGCCATCAATATTGGGTTTGCTTGTAGTTTACTTAGACAAGGAATGAAGCAGATCATAATTCACTTGGAAACTCCAGAAATTCAAGCATTGGAGAAGGCTGGAGACAAGGTGGCTATTGccaagGCTTCAAGAGAAAGTATCCGCCATCAAATATCTGAAGCTGCTCAACAGCTTACTGCCTCCAGAGGAACCTCTCAGCAAGCATTTGCTCTAATTATTGATGGAAAATCACTTGCTTATGCTTTAGAGGATAGTATGAAGAACATGTTTCTAGACCTTGCAATTCGTTGTGCATCTGTTATCTGCTGCCGTTCCTCACCGAAGCAGAAGGCACTGGTCACTAGACTGGTCAAATCTGGAACTGGTAAAACTACATTAGCAATTGGTGATGGAGCTAATGATGTAGGGATGCTTCAAGAAGCAGATATAGGGATTGGAATCAGTGGCATTGAAGGAATGCAGGCGGTTATGTCTAGTGATATTGCAATTGCACAGTTCCGCTATTTGGAAAGATTACTTCTTGTACATGGACATTGGTGTTACCGAAGGGTCTCTTCAATGATATGCTACTTTTTCTACAAGAACATCACATTTGGCTTTACCCTATTCTTATATGAGGTGTATGCATCATTCTCTGGGCAACCTGCATACAATGACTGGTTTTTGTCTCTCTATAATGTCTTATTTTCATCACTTCCTGTGATTGCTCTTGGGGTCTTTGATCAGGATGTTTCTGCTCGGTACTGTCTGAGGTTTCCTATGTTATATCAAGAAGGCGTGCAGAATGTCCTCTTTAGCTGGCGTCGAATACTCAGCTGGATGCTTAATGGCTTTATTAGTGCcataataattttcttcttctgcACGAAGGCAATGGAGATTCAAGCCTTTGATGAGAAGGGAAGAACTGCTGGGAGGGATATACTCGGAGCAACAATGTTTACTTGTGTGGTTTGGGTTGTGAACTTGCAAATGGCACTTGCTATAAATTACTTCACCTTGATTCAACATATTTTCATCTGGGGTTCCATTGCTCTCTGGTACCTTTTCCTTCTGGTATATGGAGCAATGCCTCCCAGCATTTCCACAAATGCTTACAAAGTCTTCGTTGAAACTCTTGCTCCATCTCCTTCCTTTTGGCTTGTGACATTGTTTGTGGCGATCTCAACACTTATCCCATACTTCTCTTTCTCAGCAATACAGATGAGGTTCTTTCCCATGTATCACGAAATGGTACAATGGATAAGGTACGAGGGGAAGACAAATGATCCTGAATTCATCGCTATGCTGCGGCAAGTATCGTTGCGGCCAACAACTGTCGGTTCAACAGCTCGCTTAGCAGCTAAGGAGAATGACGTTAGAGACAGTGCCACTAACCATAGATAG 3597 0.402 MVDLGRRRMRGERRRKLRLSKIYSFACGKQSLKGDHSQIGGRGYSRVVFCNEPESFEAGIRGYADNSVRSTKYTLATFLPKSLFEQFRRVANFYFLVTGILAFTELAPYTAVSAIIPLIIITGATMVKEGIEDWQRKKQDIKVNNRRVKVHTGHGTFEYTEWKNLKVGHIVKIMKDEFFPADLVLLSSSYEDAFCYVETMNLDGETNLKLKQGLEVTSSLHEDSHFSDFKATIKCEDPNANLYSFVGSMEFEEQQYPLSPQQLLLRDSKLRNTDYIFGVVIFTGHDTKVIQNSTDPPSKRSKVEKKMDRVIYFLFCILFLMAFVGSIFFGIATKDDLDNGLMKRWYLRPDDSTIFFDPKRAPAAAIFHCLTALMLYGFFIPISLYVSIEIVKVLQSMFINQDIHMYYEDANKPAHARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSIAGVAYGCGVTEVERAMNRKNGTPLIDNIGESPDRNAPIKGFNFSDERIMNGKWVNEPYANVIQNFFRLLAICHTAIPEVDEDTGNVSYETESPDESAFVIAARELGFEFYKRAQTSLSMYELDPVSGDKIERTYKLLNVLEFNSSRKRMSVIVRDEEGRILLLCKGADSVMFERLAKDGREFAEKTSEHVHEYADAGLRTLILAYRELDENQYKEFDNKFSQAKNSISEDRETLIEEVSDKIERNLILLGATAVEDKLQHGVPDCIDKLAQAGIKIWVLTGDKMETAINIGFACSLLRQGMKQIIIHLETPEIQALEKAGDKVAIAKASRESIRHQISEAAQQLTASRGTSQQAFALIIDGKSLAYALEDSMKNMFLDLAIRCASVICCRSSPKQKALVTRLVKSGTGKTTLAIGDGANDVGMLQEADIGIGISGIEGMQAVMSSDIAIAQFRYLERLLLVHGHWCYRRVSSMICYFFYKNITFGFTLFLYEVYASFSGQPAYNDWFLSLYNVLFSSLPVIALGVFDQDVSARYCLRFPMLYQEGVQNVLFSWRRILSWMLNGFISAIIIFFFCTKAMEIQAFDEKGRTAGRDILGATMFTCVVWVVNLQMALAINYFTLIQHIFIWGSIALWYLFLLVYGAMPPSISTNAYKVFVETLAPSPSFWLVTLFVAISTLIPYFSFSAIQMRFFPMYHEMVQWIRYEGKTNDPEFIAMLRQVSLRPTTVGSTARLAAKENDVRDSATNHR 1198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1350 1198 CDD P-type_ATPase_APLT_Dnf-like 65 1014 - -
Ssu2g1350 1198 Gene3D - 700 905 IPR023214 -
Ssu2g1350 1198 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 836 947 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu2g1350 1198 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 9 1193 - -
Ssu2g1350 1198 Pfam Phospholipid-translocating ATPase N-terminal 48 114 IPR032631 -
Ssu2g1350 1198 Gene3D - 547 699 IPR023299 GO:0000166
Ssu2g1350 1198 SFLD C1.7: P-type atpase like 414 916 - -
Ssu2g1350 1198 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 9 1193 - -
Ssu2g1350 1198 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 439 702 IPR023299 GO:0000166
Ssu2g1350 1198 SUPERFAMILY Calcium ATPase, transduction domain A 150 291 IPR008250 -
Ssu2g1350 1198 SUPERFAMILY Calcium ATPase, transmembrane domain M 61 1143 IPR023298 -
Ssu2g1350 1198 Pfam Phospholipid-translocating P-type ATPase C-terminal 893 1143 IPR032630 -
Ssu2g1350 1198 ProSitePatterns E1-E2 ATPases phosphorylation site. 434 440 IPR018303 -
Ssu2g1350 1198 Pfam Cation transport ATPase (P-type) 532 626 - -
Ssu2g1350 1198 Gene3D - 122 294 - -
Ssu2g1350 1198 PRINTS P-type cation-transporting ATPase superfamily signature 432 446 - -
Ssu2g1350 1198 PRINTS P-type cation-transporting ATPase superfamily signature 865 884 - -
Ssu2g1350 1198 SUPERFAMILY HAD-like 420 909 IPR036412 -
Ssu2g1350 1198 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 63 1150 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Ssu2g1350 1198 SFLD p-type atpase 414 916 IPR044492 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1350 Ssu-Chr2 57074484 57081448 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1350 17 1193 Primary Pumps ATPases AT1G68710 73.289 0.0 1885
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1350 K01530 - gmx:100811892 2216.81