Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1326 ATGAAAAAAGAATTGGAAGATCAAGGCCAGTGTTCCTCTCAACCAATCAACACCAACAACATTCAAAGCTACCAAGAGCACCTTCTCCTTCAACAACAGATGCAGCAGCAGCAACAAAACAGTGACATCTTTGGGGGTCCAAGAGGGTTAATGTTCCCAGAAGTCTCCCCAATCTTGCAACCATGGTCCATGCCTCCGGTTCACTCCTTCAACCCGGATCCGGTTCACTACAACAACACCAACCCGGTTCGAGACCATGACCAAACATTTCTTGTCCCTCCCACACCTTCACCCTATGCAAGCTTCTTCAGCAGAAGGGTCCCTTCTCTTCAGTTTGCATACGAGGGTCCCTCTTCCGATCATCACCACCATCTAAGGATCATATCTGACACCCTTGGACCCATGGTTCAACCCGGTTCAGCACCCTTTGGACTCCAAGCCGAGTTGGGAAAGATGACTGCTCAAGAAATCATGGAGGCTAAGGCCCTTGCTGCATCAAAGAGTCACAGTGAAGCTGAAAGAAGACGTAGAGAGAGAATCAACAACCATCTTGCAAAGCTTCGGAGCTTGTTGCCCAACACAACAAAAaCAGATAAAGCTTCGTTATTGGCAGAAGTGATTCAGCATGTGAAGGAGCTGAAACGCCAAACTTCGCTGATAGCAGAAACGAGTCCGGTGCCCACCGAAGCAGACGAATTAACGGTGGACGCAGTTGATGAGGACGGAAGGTTTGTGATCAAAGCCTCACTGTGCTGTGAAGATAGGTCAGATCTCTTACCTGACCTCATCAAGACGTTAAAAGGGTTGAGGCTGAGAACCCTTAAGGCTGAGATCACATCGCTTGGTGGGCGCGTGAAGAACGTGTTGGTCATCACTGGCGATGACGATAGTTCAGACACCAATGGAGAACAAAGCttgcagcagcagcagcaacaacaacaacaacaatattgtATTAGCTCAATACAAGAAGCACTTAAGGCAGTGATGGAGAAGAGTGGTGAGGATGAATCAGCTTCTGGGAATGTTAAGCGCCACAGGactaataatatcaatatcCTTGAACAAAGGTctttatga 1080 0.4556 MKKELEDQGQCSSQPINTNNIQSYQEHLLLQQQMQQQQQNSDIFGGPRGLMFPEVSPILQPWSMPPVHSFNPDPVHYNNTNPVRDHDQTFLVPPTPSPYASFFSRRVPSLQFAYEGPSSDHHHHLRIISDTLGPMVQPGSAPFGLQAELGKMTAQEIMEAKALAASKSHSEAERRRRERINNHLAKLRSLLPNTTKTDKASLLAEVIQHVKELKRQTSLIAETSPVPTEADELTVDAVDEDGRFVIKASLCCEDRSDLLPDLIKTLKGLRLRTLKAEITSLGGRVKNVLVITGDDDSSDTNGEQSLQQQQQQQQQQYCISSIQEALKAVMEKSGEDESASGNVKRHRTNNINILEQRSL 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1326 359 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 164 213 IPR011598 GO:0046983
Ssu2g1326 359 PANTHER TRANSCRIPTION FACTOR BHLH30 76 355 IPR045847 GO:0003700|GO:0006355
Ssu2g1326 359 SMART finulus 170 219 IPR011598 GO:0046983
Ssu2g1326 359 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 168 220 IPR036638 GO:0046983
Ssu2g1326 359 MobiDBLite consensus disorder prediction 332 351 - -
Ssu2g1326 359 PANTHER TRANSCRIPTION FACTOR BHLH30 76 355 - -
Ssu2g1326 359 CDD bHLH_AtAIG1_like 159 238 - -
Ssu2g1326 359 Pfam Helix-loop-helix DNA-binding domain 167 213 IPR011598 GO:0046983
Ssu2g1326 359 CDD ACT_UUR-ACR-like 249 304 - -
Ssu2g1326 359 Gene3D - 159 220 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1326 Ssu-Chr2 56415947 56419170 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1326 19 357 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 56.098 6.51e-115 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu2g1326 HLH 2.5e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1326 - - gmx:100779653 531.946
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1326 2 56415947 56419170 Ssu2g1326 2 56415947 56419170 ECH