Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1325 ATGCTAGTTGGGAGAAGGGTGATGAGCTGGAGAAGGGTGACAAATTCTCTCAAAGCTCTGGTAGCTCATggcttcctctttttcttcactCTTTTGCTTGTTCTCAAGCTTGACCATCAAGTCCATCAGTCATGGTGGATCATATTTTCACCTCTATGGATTTTTCATGCTGTTGTAGCACGGGGAAGGTTTTCTTTGCCTGCACCTTTGATGCCCCATGATCGCCATTGGGCTCCTTGTCATGCCATCTTGGCAACGCCATTACTTGTTGCTTTTGAGCTACTTCTTTGCATACATCTTGAGAGCAATTATGCGGTAAATTTAGAGATTGTCTTCTTACCCCTGCTGGCTTTTGAAATGGCAATTTTGATTGATAACATAAGGATGTGTAAGGCTTTGGTACCCAGAGATGATGAAAGTATCAGCGGCGAAGCAATACGGGAAACCCTTCCTTATTTACTGATTGCAGTATCCATGGGTTTCTTTATTGCTGCTACACTATTCACTCTTCTAAAGATACGTGGTGACATAGGTACCCTAGGATGGTGGGACTTACTTATTCTCCTTGGCATTGCAGAGTGCTTTGCCTTTTTTGTTTGTACAAAGTGGCACAATCCAACAATTCATGAAAATTGTCACGTTTCAGAACATTCATCATCATTTACTATAAGATACCTGGATAGAGGGATAGTTGTCTCCTCAGATGTAGAAGATAGACAGCAAAATAGCTTGTGTAATCTGCAAGACATTGGGGGGCATATTATGAAGATTCCCTTCATTGGTTTTCAAATACTTCTATTTATGCATTTAACGGAAACACCAAGCAGTGCCAAAAATATACCAATGTGGGTCattttttctcccctttttttgTTGCAAGGAGCTGGGGTTTTATTTGCAGCATATAGATTAGTGGAGAAAATAGTTCTTTTACTTTATAGTGGAGATGCTCCTAATAGATACACAACTATAGCATCAAAAATCCGTGATTGCTTCAGGTTCATCCATCATGGATCAAGGTTCCTAGGTTGGTGGTCAACAGATGAAGGAAGTAAAGAGGAACGTGCTAGGCTTTATTGTGCTGGTAGTTCTGGgTATAATACTTTCTCCCCTGATGCGGTGAAAAAAATGCATAGAGAACATCTTGTTGAGGAGATATGGAGATTACAAGCTGCACTGGGCACGCAGACAGAAGTTGCAAAATTGAGGCAGGAGGAGTATGAAAGACTTCAAAATGAAAAGATCTTATGTAGAGTTTGTTTTGAAAAGCAGATTAATATAGTTCTGCTTCCATGCAGGCATCACATTCTTTGTAGCACTTGCTGCCAAAAATGTAAAAGGTGTCCCATTTGTCGTGTCTTCATTGAAGAACGAATAGCGGTGTTTGAGGCGTAG 1395 0.3957 MLVGRRVMSWRRVTNSLKALVAHGFLFFFTLLLVLKLDHQVHQSWWIIFSPLWIFHAVVARGRFSLPAPLMPHDRHWAPCHAILATPLLVAFELLLCIHLESNYAVNLEIVFLPLLAFEMAILIDNIRMCKALVPRDDESISGEAIRETLPYLLIAVSMGFFIAATLFTLLKIRGDIGTLGWWDLLILLGIAECFAFFVCTKWHNPTIHENCHVSEHSSSFTIRYLDRGIVVSSDVEDRQQNSLCNLQDIGGHIMKIPFIGFQILLFMHLTETPSSAKNIPMWVIFSPLFLLQGAGVLFAAYRLVEKIVLLLYSGDAPNRYTTIASKIRDCFRFIHHGSRFLGWWSTDEGSKEERARLYCAGSSGYNTFSPDAVKKMHREHLVEEIWRLQAALGTQTEVAKLRQEEYERLQNEKILCRVCFEKQINIVLLPCRHHILCSTCCQKCKRCPICRVFIEERIAVFEA 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1325 464 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 5 463 - -
Ssu2g1325 464 Pfam Transmembrane Fragile-X-F protein 35 292 IPR019396 -
Ssu2g1325 464 Pfam Zinc finger, C3HC4 type (RING finger) 415 457 - -
Ssu2g1325 464 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 392 463 IPR013083 -
Ssu2g1325 464 ProSiteProfiles Zinc finger RING-type profile. 417 452 IPR001841 -
Ssu2g1325 464 SUPERFAMILY RING/U-box 408 458 - -
Ssu2g1325 464 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 5 463 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1325 Ssu-Chr2 56360567 56376007 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1325 8 463 C3H Transcription Factor Family AT1G73950 59.698 0.0 556
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1325 - - aprc:113869359 789.26