Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1314 ATGGATGCAATTAGTTCCATGGATGAAAGCACCACCACGGAATCACTCTCCATGAGTCTTTCTCCGACGACTTCGTCGAAGAAGGCTTCTCCGCCGCCGCCGAACACGCTGTGCCGGGTCGGCAGCGGCGCGAGCGCGATTGTCGATCCGgacggcggcggcggcggcggaggaggaggaggagccGAGGCGGAGTCGCGAAAGCTTCCGTCCTCGAAATACAAAGGGGTAGTGCCCCAGCCGAATGGTCGCTGGGGCGCGCAGATTTACGAGAAGCACCAGCGCGTGTGGCTCGGAACCTTCAACGAAGAGGACGAGGCCGCGAGGGCCTACGACATCGCCGCGCAGCGCTTCCGCGGAAAGGACGCCGTCACCAACTTCAAGCCcctcgccgccgccgccgccgccggtgacgacgacgacgacggcGAAGCCGAGTTCCTCAGCTCGCATTCCAAGTCCGAGATCGTCGACATGCTGCGGAAGCACACGTACAATGACGAGCTCGAGCAGAGCAAGCGCAGCCGCGGAGTCGTCGGCCGGCGGCGCGGCGGAGTCGCCGCCGCCGGCAACGGAGCCTCTCTCGCCGGCGCGTGCGCTACGAAGGCGCGTGAGCAGCTGTTCGAGAAGACCGTGACGCCGAGCGACGTGGGGAAGTTGAACCGGCTGGTGATACCGAAGCAGCACGCGGAGAAGCACTTTCCGTTACAGAGCGTTAACGGCGTTAGCGCGTCGTCGGTGGCGAAGGGCGTTCTGTTGAACTTCGAAGACGTTGGAGGGAAAGTGTGGCGGTTTCGTTACTCGTATTGGAATAGTAGCCAGAGTTACGTTTTAACCAAGGGTTGGAGCCGGTTCGTTAAGGAAAAGAATCTCAAAGCCGGGGACACGGTTTGTTTTCACCGGTCCACTGGACCGGACAAGCAGCTTTACATCGATTGGAAGGCGAGGAATGTTAACGAGGTTGGGTTGTTCAGACCGGTGGTCGAGCCGATTCAGATGGTTCGGCTCTTTGGGGTTAACATTTTGAAACTACCCGGTTCggatggaaataataataataataataataataataatgcaagtGGTACTACTATTCCTGGGTGCTGCAGCGGCAAGAGGAGGGAAATGGAACTGTTTTCGCTAGAGTGTAGCAAGAAACCTAAGATTATTGGCGCTTTGTAA 1182 0.5212 MDAISSMDESTTTESLSMSLSPTTSSKKASPPPPNTLCRVGSGASAIVDPDGGGGGGGGGGAEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDIAAQRFRGKDAVTNFKPLAAAAAAGDDDDDGEAEFLSSHSKSEIVDMLRKHTYNDELEQSKRSRGVVGRRRGGVAAAGNGASLAGACATKAREQLFEKTVTPSDVGKLNRLVIPKQHAEKHFPLQSVNGVSASSVAKGVLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDTVCFHRSTGPDKQLYIDWKARNVNEVGLFRPVVEPIQMVRLFGVNILKLPGSDGNNNNNNNNNNASGTTIPGCCSGKRREMELFSLECSKKPKIIGAL 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1314 393 CDD B3_DNA 207 302 IPR003340 GO:0003677
Ssu2g1314 393 SUPERFAMILY DNA-binding pseudobarrel domain 206 311 IPR015300 -
Ssu2g1314 393 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 1 393 IPR044800 GO:0003700
Ssu2g1314 393 MobiDBLite consensus disorder prediction 1 80 - -
Ssu2g1314 393 SMART rav1_2 73 134 IPR001471 GO:0003700|GO:0006355
Ssu2g1314 393 CDD AP2 72 127 IPR001471 GO:0003700|GO:0006355
Ssu2g1314 393 Pfam AP2 domain 72 120 IPR001471 GO:0003700|GO:0006355
Ssu2g1314 393 SMART B3_2 208 317 IPR003340 GO:0003677
Ssu2g1314 393 Pfam B3 DNA binding domain 208 314 IPR003340 GO:0003677
Ssu2g1314 393 ProSiteProfiles AP2/ERF domain profile. 73 128 IPR001471 GO:0003700|GO:0006355
Ssu2g1314 393 MobiDBLite consensus disorder prediction 1 32 - -
Ssu2g1314 393 PANTHER AP2/ERF AND B3 DOMAIN TRANSCRIPTION FACTOR 1 393 - -
Ssu2g1314 393 SUPERFAMILY DNA-binding domain 72 128 IPR016177 GO:0003677
Ssu2g1314 393 Gene3D - 197 322 IPR015300 -
Ssu2g1314 393 ProSiteProfiles B3 DNA-binding domain profile. 208 317 IPR003340 GO:0003677
Ssu2g1314 393 Gene3D AP2/ERF domain 72 129 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1314 Ssu-Chr2 56055247 56056428 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1314 8 393 B3 DNA Binding Superfamily AT1G25560 58.291 1.50e-142 408
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-RAV Ssu2g1314 B3 1.1e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1314 K09287 - gmx:100801107 575.089