Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1290 ATGGCCACCGACGACGGCCATGATTCCAGTCGCAAGCACCGCCGCTCCTCCTCTCCGGAGGACTCCGATGACAGATCCTCGAAGCGCCACCACCGTCGCCGCCACGGAAGCAGAAAGCCAGACGAAGAAAGCGAGCGCGATTGTGAAATCGCTCCGGCGGTACCTTCTCCGACTCCGCCCCGCAGCTCTAGCACGAATCGTCGCGTCCCCGATGACGACGATGTCGAAGAGGGAGAAATTCTCGAAGAAGATGATGGCGATGTCGCGAAACAGCACGCGCAATCTGATGTTGAGCCTGGCGAAATTGACGTGACCGGAAATCGAGATGTTCGATCCGATAACGCAAATCTGGGACTTTTGGTTAGAGAGACTTTGTTTCATGCTACAGATTTAAAAACTAGAAGGCAGTGCAATATTGATGATGAGTTTATTAGTCCTGATGGAGAAGATGGGACATGCCATCGGAGTCATGTTGGCTGTGGAATACATGAAGATGGTGGTCTTCCTAGTTATTCAAGTGATGATCCTCAAGATGGAAAGGATAGTAGAGCTAGTACGGATGGAATGGGCAATGGGCTTATGGATCATAAATCTTTGAAAGGGGATAAGAGGGATAGTGGAGGACATGGATGTTTTAAAGGAAATGAGAAACTAAAAGATTACTGTGATGATGAGGGTGTGGAGGTTGACAGAGGGAAAGTTGGTTACTATAGAAACTCTTCCTCTGAAAGTGGAGGAGAGAAATATAGAAGATCAAGACATTCACATTCTTGTGATAGATATAGAAGTCGATCAAGATCAAGTGGTCATACTAGGGACAGGACTCGTTCTGGTAGTATGGTAGAAGAATATGCTCATTCAAAGATAAAGCACTCTGGTGAATATGCTAGTAGACTGAAGACTGACTATGATGATGAAAGAATGATGGCAAGCAGAAGGGAGAACAGAGATTTGGTGGTGGATAAAAGAAGGGAACACAGAGCAAGTCATCACATTCGGGAGGCCCGGGGTAGGGATAGGAGTAGGGACAGAGATGTTGAATGGGACTTAAAGACGGAAAAAGAACAAGAGAGGGGCAGGAAAAGGGAGGTCAATTGGGTGTGTAGAAGTGAAAAAGAACGTGAAAGGAGCCATGAGAGGCATGGAAGGGATGTAGATAAAGATAGGAGGAGGGAAAGGGAGGATGATAGGGataggagaagagaaaaggaaagggaTAGGAGCTGTGAGACAGTGTTTGAGAAGGATAAGAGAAGGGATAAGGAAAGAGATCGAAGTAGAGACAGAACAAGGGGTGGTGAGAGAGATAGATACTGGGAGACTGAACATGATTATAAGAATTGGGAAAGggataaaattaaagagagggAGAGGCGAGATGGTAGAAAGAGGCACAGGGATAGAGACACTTTGAATGGTATGGGTAAGTATCTGCCTCATGAGGATGGTTATGATCGTTGTGATAGATATAGAAGgcattcaaaacaaaaagaaactgAATGCcaccaagaaagaaaaagaaattctgGGCCCGTAGAGGTTTATAACTCTATGGGAAGTACCTTGGCAGATGATGAAAACAAACTAGAGAGGGGTGAGGATGAACAAGATGACTTTGATGAGAAAGTTACGTTACAATTACCTGATCAAGAAGAGGAAGATCTCAATAGGATTAAAGAAGAGAGTAGAAGGAGAAGGGAGGCAATCTTAGAGAAATACAAGAAGCAGCTGCAACAAGTAGAACAAAATAcagaaaatgaaggaaaagACGAACAAGCTGTGGAGATTCCTCCTACCATTCCTGATGCTCTTGATGGTAAGAGTGATGGTGTTGATgatgtggaaacaatattctcTGTCAGGAAATCTCCTCTGGAAAATGGCAATGTTGCTTCTGATAAGATCTCTGGTACCGGGGGCCTGGGAGAGGGTACTCCTAAGAGTGAGAGATCAGATGACAAGTTTTGTGACGATATATTTGGTGAGACACCAACTGGAGTTCAGAAATCAGGAAAAGCAGAAGGTTTACGGATTGAGAGGGGTGGCCTACATGACAATTGGGATGATGCAGAAGGTTATTATAGTTATCGTTTTGGTGAAGTATTTGATGGCCGATATGAAGTCACCGCAGCTCATGGGAAGGGTGTGTTTTCAACTGTGGTCCGGGCAAAGAATCTTAAAAATAGTAATGGTGAGCCTGAAGAAGTTGCCATAAAAATTATTCGTAATAATGACACAATGTACAAGGCTGGTATGGATGAGTTAGTcatattaaagaaattagtaGGTGCTGATCCAGATGATAAGCGTCATTGTGTTCGTTTCCTTTCAAGTTTTAAGTATAGGAATCACCtttgtttagtttttgaatCTCTCCATATGAATCTGCGTGAGGTTTTAAAGAAGTTTGGTCGCAATATTGGCCTTAGGCTAACTGCAGTTAGAACGTATGctaaacaactttttattgcACTGAAGCATCTCCGGAACTGTGGTGTTCTCCATTGTGATATAAAGCCAGATAATATGTTGGTGAATGAGGCTAAAAATGTGTTGAAGCTTTGTGACTTTGGTAATGCCATGTTTGCTGGTAAAAATGAAGTTACACCATATCTTGTGAGCCGCTTTTATCGTGCCCCTGAAATCATACTTGGCTTACCCTATGATCATCCATTGGATATGTGGTCTGTAGGCTGTTGTTTGTATGAACTCTATACAGGGAAAGTTCTTTTTCCAGGTTCTACAAACAATGACATGCTACGGCTCCACATGGAATTGAAGGGCCCTTTTCCAAAAAAGATGCTTCGTaagGGAGCATTTATTGAACAGCATTTTGATCAGGACCTGAATTTCCTTGCTACAGAGGAAGACCCTGTGACGAAAAAGGCTATAAAGCGGATGATTGTCAACATAAAGCCAAAAGATATTGGAACAATCATCACTGGCTCTCCAGGGGAGGATCCAAAGATGTTAGCCAATTTTAAGGATCTTCtggaaaaggtttttgtattggATCCAGACAAGAGGTTGACAGTCTCACAAGCATTGAATCACCCATTCATCACTGGCAAGTGA 3075 0.4107 MATDDGHDSSRKHRRSSSPEDSDDRSSKRHHRRRHGSRKPDEESERDCEIAPAVPSPTPPRSSSTNRRVPDDDDVEEGEILEEDDGDVAKQHAQSDVEPGEIDVTGNRDVRSDNANLGLLVRETLFHATDLKTRRQCNIDDEFISPDGEDGTCHRSHVGCGIHEDGGLPSYSSDDPQDGKDSRASTDGMGNGLMDHKSLKGDKRDSGGHGCFKGNEKLKDYCDDEGVEVDRGKVGYYRNSSSESGGEKYRRSRHSHSCDRYRSRSRSSGHTRDRTRSGSMVEEYAHSKIKHSGEYASRLKTDYDDERMMASRRENRDLVVDKRREHRASHHIREARGRDRSRDRDVEWDLKTEKEQERGRKREVNWVCRSEKERERSHERHGRDVDKDRRREREDDRDRRREKERDRSCETVFEKDKRRDKERDRSRDRTRGGERDRYWETEHDYKNWERDKIKERERRDGRKRHRDRDTLNGMGKYLPHEDGYDRCDRYRRHSKQKETECHQERKRNSGPVEVYNSMGSTLADDENKLERGEDEQDDFDEKVTLQLPDQEEEDLNRIKEESRRRREAILEKYKKQLQQVEQNTENEGKDEQAVEIPPTIPDALDGKSDGVDDVETIFSVRKSPLENGNVASDKISGTGGLGEGTPKSERSDDKFCDDIFGETPTGVQKSGKAEGLRIERGGLHDNWDDAEGYYSYRFGEVFDGRYEVTAAHGKGVFSTVVRAKNLKNSNGEPEEVAIKIIRNNDTMYKAGMDELVILKKLVGADPDDKRHCVRFLSSFKYRNHLCLVFESLHMNLREVLKKFGRNIGLRLTAVRTYAKQLFIALKHLRNCGVLHCDIKPDNMLVNEAKNVLKLCDFGNAMFAGKNEVTPYLVSRFYRAPEIILGLPYDHPLDMWSVGCCLYELYTGKVLFPGSTNNDMLRLHMELKGPFPKKMLRKGAFIEQHFDQDLNFLATEEDPVTKKAIKRMIVNIKPKDIGTIITGSPGEDPKMLANFKDLLEKVFVLDPDKRLTVSQALNHPFITGK 1024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1290 1024 Gene3D Transferase(Phosphotransferase) domain 1 766 1022 - -
Ssu2g1290 1024 MobiDBLite consensus disorder prediction 164 210 - -
Ssu2g1290 1024 MobiDBLite consensus disorder prediction 627 652 - -
Ssu2g1290 1024 MobiDBLite consensus disorder prediction 85 108 - -
Ssu2g1290 1024 CDD STKc_PRP4 705 1021 IPR044092 GO:0004674|GO:0006468|GO:0045292
Ssu2g1290 1024 MobiDBLite consensus disorder prediction 1 27 - -
Ssu2g1290 1024 Pfam Protein kinase domain 708 1021 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g1290 1024 ProSitePatterns Serine/Threonine protein kinases active-site signature. 833 845 IPR008271 GO:0004672|GO:0006468
Ssu2g1290 1024 PANTHER DUAL SPECIFICITY PROTEIN KINASE 373 1024 - -
Ssu2g1290 1024 Coils Coil 559 590 - -
Ssu2g1290 1024 MobiDBLite consensus disorder prediction 196 210 - -
Ssu2g1290 1024 ProSiteProfiles Protein kinase domain profile. 706 1021 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g1290 1024 MobiDBLite consensus disorder prediction 450 562 - -
Ssu2g1290 1024 Gene3D Phosphorylase Kinase; domain 1 677 765 - -
Ssu2g1290 1024 MobiDBLite consensus disorder prediction 1 111 - -
Ssu2g1290 1024 SMART serkin_6 706 1021 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g1290 1024 Coils Coil 522 542 - -
Ssu2g1290 1024 MobiDBLite consensus disorder prediction 577 610 - -
Ssu2g1290 1024 MobiDBLite consensus disorder prediction 450 509 - -
Ssu2g1290 1024 SUPERFAMILY Protein kinase-like (PK-like) 693 1023 IPR011009 -
Ssu2g1290 1024 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 373 1024 - -
Ssu2g1290 1024 MobiDBLite consensus disorder prediction 236 436 - -
Ssu2g1290 1024 MobiDBLite consensus disorder prediction 541 562 - -
Ssu2g1290 1024 MobiDBLite consensus disorder prediction 261 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1290 Ssu-Chr2 55505988 55516603 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1290 659 1023 MAP Kinase Gene Family AT2G18170 29.921 4.07e-27 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_DYRK-PRP4 Ssu2g1290 Pkinase 1.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1290 K08827 - gmx:100776908 1207.59