LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu2g1282	ATGGCTCTGACCTttaccctctctctctctctcgtcgTCGTTTCGTTAGGGCATAAAACCCCTTTTCGGATCGGTGGAGCAAAGCCTCGCCGGCGAGATTCCCGAGGCTGTTCAATCGGCGATCGAGCACCGGCGAAAGAGACGAAGATGAAGATTTTCGTGAAGACTCTCAAGGGAACGCACTTCGAAATTGAAGTGAACCCCTCGGACACGCTTTCTGAagtgaagaaaaatatagaaactgTTCATGGTGCAGATGTCTATCCTGCTGCACAGCAAATGCTTATTCATCAAGGAAAAGTTCTAAAGGATGGTACTACTTTGGAGGAAAATAAAGTAGCTGAAAAtagttttattgtaattatgcTATCAAAgACTAAGAGCTCATCTGGTGAAGGATCTACTACTTCAACTGCACCTTCAGCCAAGACAAGTGCAGCTCCTACTTCAACCTCTGTGTCTGCTGCACCTCAAGCTCCTGCTTCAACTGGAGCGACGCCTACACCTGTTACTGCCCCAGCAGCTGCTACTGCTTCTGCACCAGCTCCTGCTCCTGCTTCTGCACCAGCTCCTACTCCTGCTCCTGCTCCTGCTCCTGCTCCTGCTCCTATATCTTCAGGCTCTGCTGTGCCAGGGTCTGATATATATGGGCAGGCAGCATCCAATCTTGTTGCTGGAAGCAACTTGGAGGAAACAATTCAGCAAATCCTTGATATGGGTGGAGGAAGCTGGGATAGGGATACTGTTGTTCGTGCTCTTCGTGCCGCTTATAACAACCCCGAGAGAGCTGTTGAATATTTGTATTCCGGCATACCAGAGCAAGCTGAAGCTCCACCTGTTACCCGAGTGCCTGTGAGTGCTCAACCTGCAAATCCTCCAGCAGCTGCTCCACAGGCAGCACAACCAGCATCTGTTCCTTCTAGTGGACCTAATGCTAATCCTTTAGACCTCTTTCCCCAGGGCCTTCCTAATGTTGGTTCTGGTGCTGCTGGCGCTGGCTCTTTAGACTTTCTGCGCAACAGTCAACAGTTCCAAGCCTTACGTGCTATGGTGCAAGCTAATCCACAAATATTGCagCCTATGCTACAAGAGCTTGGCAAACAAAATCCTCATCTTATGAGATTGATTCAAGAGCATCAAGTTGACTTCCTTCGCCTAATTAATGAACCTGTTGAAGGGGGTGAGGGaaatatactGGGACAGCTGGCTGATGCCATGCCGCAAGCAGTGACTGTCACCCCTGAGGAGCGGCAAGCAATTGAACGTCTCGAAGCAATGGGTTTTGATCGTGCAACTGTATTGGAGGTGTACTTTGCTTGTAACAAAAATGAGGAACTGGCTGCCAACTACCTTTTAGATCACATGCATGAGTTTGACGAATAA	1383	0.4657	MALTFTLSLSLVVVSLGHKTPFRIGGAKPRRRDSRGCSIGDRAPAKETKMKIFVKTLKGTHFEIEVNPSDTLSEVKKNIETVHGADVYPAAQQMLIHQGKVLKDGTTLEENKVAENSFIVIMLSKTKSSSGEGSTTSTAPSAKTSAAPTSTSVSAAPQAPASTGATPTPVTAPAAATASAPAPAPASAPAPTPAPAPAPAPAPISSGSAVPGSDIYGQAASNLVAGSNLEETIQQILDMGGGSWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEAPPVTRVPVSAQPANPPAAAPQAAQPASVPSSGPNANPLDLFPQGLPNVGSGAAGAGSLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIQEHQVDFLRLINEPVEGGEGNILGQLADAMPQAVTVTPEERQAIERLEAMGFDRATVLEVYFACNKNEELAANYLLDHMHEFDE	460

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Ssu2g1282	460	PRINTS	DNA repair protein Rad23 signature	442	457	IPR004806	GO:0006289
Ssu2g1282	460	PRINTS	DNA repair protein Rad23 signature	410	426	IPR004806	GO:0006289
Ssu2g1282	460	PRINTS	DNA repair protein Rad23 signature	361	383	IPR004806	GO:0006289
Ssu2g1282	460	PRINTS	DNA repair protein Rad23 signature	427	441	IPR004806	GO:0006289
Ssu2g1282	460	MobiDBLite	consensus disorder prediction	126	207	-	-
Ssu2g1282	460	MobiDBLite	consensus disorder prediction	126	173	-	-
Ssu2g1282	460	MobiDBLite	consensus disorder prediction	283	315	-	-
Ssu2g1282	460	CDD	Ubl_Rad23	50	123	-	-
Ssu2g1282	460	SUPERFAMILY	Ubiquitin-like	50	128	IPR029071	-
Ssu2g1282	460	SUPERFAMILY	UBA-like	397	459	IPR009060	GO:0005515

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu2g1282	Ssu-Chr2	55326572	55344850	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu2g1282	50	123	Cytoplasmic Ribosomal Protein Gene Family	AT3G52590	41.892	1.67e-09	54.3

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu2g1282	K10839		-	gmx:100809066	598.586

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ssu2g1282	2	55326572	55344850	Ssu2g1282	2	55326572	55344850	ECH

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