Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1276 ATGCTGGGGCCTCTTGATCAATCGGCTAATACGATGAAAAAAATCAAGCACAAGCGGAATCCATTTCATGATTCCAAAACGACAAGGAAACTGCGCATCATTTGTGATGATCCTGATGCTACTGACTCTTCGTCAGACGAGGATGAGCGTTTTGGGAATGGTAGGAAGGTGAAGAGAACTGTGGTTGAGGTTGCTCTTCCACTTGTTTCAGTTAACTCTTTCACTGCAGATGAAACTAGTACTCAGAGTTCAAACGATGATGAACTGAACAAGGTGAGGGTTTTGGCCAAAACCCCCTCAGTGAAGAGGCAACCCTGTGGGAAATACAAAGGTGTTCGGATGAGGAAATGGGGCAAATGGGCTGCTGAGATTCGTGATCCTTTCAAGGGTGCGCGTATCTGGTTGGGCACTTACAACACTGCAGAAGAGGCTTCTCAAGCCTATGAGACCAAAAGGCTTGAATTTGAGGCCATGGCCAAGGCTCTATCTGATGAGAagagcaacaacaacaacaacagcaacaataaTGTTGTTGCTTCTGTTGAAACCGTGGCTGCCCCTGAAAAGAACAGTTCCAACTACTGTGTTTCTTCTGCTGCAGCTTCTGTATCAGACTCCAAATCTGCTACTTTGGATGGCTCAGAGAGTGTGTTGTCCCACACATCATCTTCTGTGCTTGAATTGGATACCTCTGCTTCCAATTTGGTTGGGAGGGGTAAGGTTTCGAGCAATGAAGTTGTTGAGACCAAAAGTTTGGAGGCTGAATTTGCTGAGCTGGAAATGCCGGATTTGAGTATGCTGAATGTGCCATCCCCATCTGCTGTTGCTGCTCCGTCACAGTTTGAATGGGATTGGCTGGCATTTGACGGTTTCGAGCATGGCTTTGATGATGATCTTACTGCCCTGGAAGACATTCAGATTTTCGGTTTCGATGACAACGAGCCCAGTGAGCTTCCTGATTTCGATTTTGATGACTTTGGTGCTGATGAGTTTGCTGGTTGGATTGAAGAACCCCTCAATATACCTTGCGTATAG 1035 0.4502 MLGPLDQSANTMKKIKHKRNPFHDSKTTRKLRIICDDPDATDSSSDEDERFGNGRKVKRTVVEVALPLVSVNSFTADETSTQSSNDDELNKVRVLAKTPSVKRQPCGKYKGVRMRKWGKWAAEIRDPFKGARIWLGTYNTAEEASQAYETKRLEFEAMAKALSDEKSNNNNNSNNNVVASVETVAAPEKNSSNYCVSSAAASVSDSKSATLDGSESVLSHTSSSVLELDTSASNLVGRGKVSSNEVVETKSLEAEFAELEMPDLSMLNVPSPSAVAAPSQFEWDWLAFDGFEHGFDDDLTALEDIQIFGFDDNEPSELPDFDFDDFGADEFAGWIEEPLNIPCV 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1276 344 SUPERFAMILY DNA-binding domain 108 155 IPR016177 GO:0003677
Ssu2g1276 344 Gene3D AP2/ERF domain 107 163 IPR036955 GO:0003700|GO:0006355
Ssu2g1276 344 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF119 10 344 - -
Ssu2g1276 344 Pfam AP2 domain 108 157 IPR001471 GO:0003700|GO:0006355
Ssu2g1276 344 SMART rav1_2 108 176 IPR001471 GO:0003700|GO:0006355
Ssu2g1276 344 ProSiteProfiles AP2/ERF domain profile. 108 165 IPR001471 GO:0003700|GO:0006355
Ssu2g1276 344 CDD AP2 108 148 IPR001471 GO:0003700|GO:0006355
Ssu2g1276 344 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 10 344 - -
Ssu2g1276 344 PRINTS Ethylene responsive element binding protein signature 109 120 IPR001471 GO:0003700|GO:0006355
Ssu2g1276 344 PRINTS Ethylene responsive element binding protein signature 131 147 IPR001471 GO:0003700|GO:0006355
Ssu2g1276 344 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1276 Ssu-Chr2 55149456 55150490 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1276 14 343 AP2-EREBP Transcription Factor Family AT1G68550 35.072 2.37e-39 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ssu2g1276 AP2 8.4e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1276 - - var:108335041 483.411