Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1273 ATGAAACTGAGTTGTAATGGGTGTCGTATTCTTCGCAAAGGTTGCAGTGAAGACTGTGTCATAAGGCCATGCCTTGAGTGGATCAATGGTCCTCAGGCTCAAGCCAACGCTACTCTTTTCCTTGCCAAATTCTATGGCCGAGCTGGCTTACTCAACCTCATCAATACTGCCCCACAACACCTTCGCCCTGCTGTGTTCAAGTCACTAATGTACGAGGCATGTGGGAGAATTGTGAACCCAACATATGGGTCATTGGGCCTATTTTGGACGGGTGAATGGGCCCGATGCCAAGCTGCCGTTGATGCTGTGCTAATTGGGTCCCAGATCAATGTCATGGAACCTTCCAATTCGCAGTGTCCAAAGATTGCTGATGTGGACAAGTCTAAAGGAAAAGCCAAGCTCGTGTCCAAAGATGTTGACATGGACAAGTCGAACGGAAAAGCCAAGCTCAAGTGGACCGGGAATGTGATTAAGTCGAAGTCGCGAGTGGGCTTGGTTGACTCGGCTATGTTGTGGAAATTGGCTTCGAGCCATGAGCCAGAAGGATTAAAAGGTGATAGTGAGGAAACTGTGGAGGCTATGTTGTTGAGCCAAGACAAGCCGAGCCGAAATGTTGGAGCCGAGATGGATTTGGATCTCACTCTTGGCTAG 651 0.49 MKLSCNGCRILRKGCSEDCVIRPCLEWINGPQAQANATLFLAKFYGRAGLLNLINTAPQHLRPAVFKSLMYEACGRIVNPTYGSLGLFWTGEWARCQAAVDAVLIGSQINVMEPSNSQCPKIADVDKSKGKAKLVSKDVDMDKSNGKAKLKWTGNVIKSKSRVGLVDSAMLWKLASSHEPEGLKGDSEETVEAMLLSQDKPSRNVGAEMDLDLTLG 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1273 216 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Ssu2g1273 216 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 216 - -
Ssu2g1273 216 Pfam Lateral organ boundaries (LOB) domain 4 102 IPR004883 -
Ssu2g1273 216 PANTHER LOB DOMAIN PROTEIN 1 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1273 Ssu-Chr2 55024927 55026241 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1273 1 215 AS2 family AT3G02550 46.696 3.62e-62 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Ssu2g1273 LOB 1.4e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1273 - - gmx:100789066 288.115