Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1272 ATGATTTCCACTAAGAGCAACGAGGCAAACGCCGTTGGCGCCAAAACGGCAAGAGCGTGCGATAGCTGCATAAAAAAGCGAGCACGTTGGTACTGTGCCGCGGACGACGCGTTCCTCTGCCAAGCTTGCGACTCTTCCGTTCACTCAGCGAACCCGTTGGCGCATAGACACCACCGAGTTCGCTTGAATAGTAATTGTGCTCCATCGTGGCACAAAGGGTTCACCAAGAAACCCCGAACGCCACGTCACGGGAAGCACGCTCAGGAGTTAGGTTTAACTGACAAGGTTAGTCTCTCACAAAGTGACAGTTTAAGATGTGAATTCTTATTAAGAGGTGTGTCCACATTTAATACTCGACCGTGTCTCGCACAGGACTGTTTCCGAAAAAGAATTCATGTGAGAAACCGAGAAAACCAAAAAACGAAGAACCCGTTCGATGTGGTGCCTGAAGTGTGTCCGGAAGACACAAATTCAAATTCCCATGAAGAGAGCGCGGAGGAGGTTCTTTTTAGAGTGCCGGTTTGCGCAACTCCTTCACCTGAACAAGAAATATCGGTAACCAACGCGAGCAAAGTTTTGCTAGGTAGTGAAAGCGCGTTTGAAATTGCGGAGTTTGCTGCTGATGTTGAGAGTTTGTTGGGTACGGGACTAGAGAGTGAGTGTGTGGGGATGGAAGAGCTGGGGCTGGTTGGTGCCAAAGAGGAGGGGTATTCTCCGTGGGAGTGTTGTGTGGGTGTGGGTGGTGGTGGGAACGTGGAGGTGGGGAGAGAAGAGGCGTTTGAGTTGGGGTTTGATTGTGATGGTGAGGCGAATGTCGCGTTAGGGTTGGATGAGAGCAAAGATAGGAAGATTAGTAATGGTGGAGAATTCAGAGAGAGTGATGAAGCAAAGAGGAAGAAGATACTGTTGTTGCGGTTAGATTATGATGCTGTAATCACTGCTTGGGCGAGCCAAAAATCTCCGTGGATTGCTGGTTATAAACCAGACTTGGATACTTTGCAGTGCTGGCCTCATTGCATGGGAACTCGTGGAGTGGAGTTTCACCAACCTTGTGGTGAATTGGGTGGAGTATTTGGGTGTCATCCAGCAATGGCAGACGGGGGAAGAGAAGCTAGAGTATCAAGATATAGAGAAAAGCGACGAACAAGGTTGTTCTCAAAGAAAATAAGGTATGAGGTTCGAAAATTGAACGCGGAGAACAGACCCAGAATGAAAGGGAGGTTTGTAAAGAGGGCTTCCTTTGTGGCCCCACCGACTTTGCCTTTGCTAAACAAataa 1278 0.4859 MISTKSNEANAVGAKTARACDSCIKKRARWYCAADDAFLCQACDSSVHSANPLAHRHHRVRLNSNCAPSWHKGFTKKPRTPRHGKHAQELGLTDKVSLSQSDSLRCEFLLRGVSTFNTRPCLAQDCFRKRIHVRNRENQKTKNPFDVVPEVCPEDTNSNSHEESAEEVLFRVPVCATPSPEQEISVTNASKVLLGSESAFEIAEFAADVESLLGTGLESECVGMEELGLVGAKEEGYSPWECCVGVGGGGNVEVGREEAFELGFDCDGEANVALGLDESKDRKISNGGEFRESDEAKRKKILLLRLDYDAVITAWASQKSPWIAGYKPDLDTLQCWPHCMGTRGVEFHQPCGELGGVFGCHPAMADGGREARVSRYREKRRTRLFSKKIRYEVRKLNAENRPRMKGRFVKRASFVAPPTLPLLNK 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1272 425 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 6 1 417 - -
Ssu2g1272 425 Pfam CCT motif 369 411 IPR010402 GO:0005515
Ssu2g1272 425 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 1 417 - -
Ssu2g1272 425 CDD Bbox1_BBX-like 19 62 - -
Ssu2g1272 425 SMART bboxneu5 15 62 IPR000315 GO:0008270
Ssu2g1272 425 ProSiteProfiles CCT domain profile. 369 411 IPR010402 GO:0005515
Ssu2g1272 425 ProSiteProfiles Zinc finger B-box type profile. 15 62 IPR000315 GO:0008270
Ssu2g1272 425 Pfam B-box zinc finger 17 58 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1272 Ssu-Chr2 55005107 55006813 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1272 9 414 C2C2-CO-like Transcription Factor Family AT1G68520 41.723 1.14e-81 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Ssu2g1272 CCT 1.4e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1272 - - vun:114173052 441.425