Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1268 ATGTGTATGAGACCAGAAAAGAACCCATTAGATCTCAACAACTTGCCTGATGAGTACTCTAGAGATGGTAAACAACTCCTCCAAGATAGTTCCTCATCCgggtgcaggaaaaagaaaaacggCTTGAAGGATGCAATAGACGAGTGTGGGAAGGTCTACGAGTGTAGATTTTGTTCCCTCAAGTTCTGCAAGTCACAGGCTCTCGGGGGACACATGAACCGCCACCGCCAAGGCTAG 237 0.4304 MCMRPEKNPLDLNNLPDEYSRDGKQLLQDSSSSGCRKKKNGLKDAIDECGKVYECRFCSLKFCKSQALGGHMNRHRQG 78
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1268 78 PANTHER ZINC FINGER PROTEIN JAGGED 3 77 IPR031113 GO:0007275
Ssu2g1268 78 ProSiteProfiles Zinc finger C2H2 type domain profile. 53 78 IPR013087 -
Ssu2g1268 78 Gene3D Classic Zinc Finger 28 78 - -
Ssu2g1268 78 PANTHER ZINC FINGER PROTEIN JAGGED 3 77 IPR045320 GO:0003700
Ssu2g1268 78 MobiDBLite consensus disorder prediction 1 39 - -
Ssu2g1268 78 ProSitePatterns Zinc finger C2H2 type domain signature. 55 75 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1268 Ssu-Chr2 54880939 54882728 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1268 6 77 C2H2 Transcription Factor Family AT1G13400 59.722 7.20e-18 72.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu2g1268 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1268 - - pop:18101502 143.28