Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1267 ATGCGTGTGTGTGTCTGTGGCGGTGCAGAGAGGGAAACAGAGACGCTGAACCAGGCTCGTCAGCTGGTCTACCGTAACGATCACAACCTAAGCACCCAAGGTGTCCCCCACCCAGGATGCTGTCAACCAATAGCATCAGGGGGCTATCATCCTGCAAGCAACATGGGAGACCCAACAATGAGTCTAAGATTCCCAAGATACATGTCTGGTTCATCCTCACTCCACATGCCACCACCACATGCTCCACCACAACACCAACAACCATCGCAACACTTCTTATACGCCTCACCCCCACGACCCCTTTCTTTTCCCTCACCCTATTCTCACCATCATCCGGTGAGCGATTACTATGTGGGTCATGTTCTTAGCGGTGGCACCAAGCAGCACAACCTCAACGACTACACTTGCATTGGGGCACCCGTGGGACAAGCGTTCGCGGGCGGTGGTAAGGACAGGTCACTGCAGAATCAGGAGGAAGCGCTGAGTTGGGGAAGGGGCTATTCAGGAACGCAGCAGCGATTGGATACTCACTCAGCGATCAATCGGTTTCAAGATGGGTTCTAA 564 0.5372 MRVCVCGGAERETETLNQARQLVYRNDHNLSTQGVPHPGCCQPIASGGYHPASNMGDPTMSLRFPRYMSGSSSLHMPPPHAPPQHQQPSQHFLYASPPRPLSFPSPYSHHHPVSDYYVGHVLSGGTKQHNLNDYTCIGAPVGQAFAGGGKDRSLQNQEEALSWGRGYSGTQQRLDTHSAINRFQDGF 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1267 187 MobiDBLite consensus disorder prediction 66 107 - -
Ssu2g1267 187 PANTHER ZINC FINGER PROTEIN JAGGED 10 174 IPR031113 GO:0007275
Ssu2g1267 187 PANTHER ZINC FINGER PROTEIN JAGGED 10 174 IPR045320 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1267 Ssu-Chr2 54879406 54880680 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1267 1 185 C2H2 Transcription Factor Family AT1G68480 33.333 8.50e-09 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1267 - - vra:106776856 239.58