Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1259 ATGAGCAAGGTGGAGAATTATACCTTGACCAATCAAGGACTCATCATGCCTTTTTCCAACAATGACAACCTTTTGGATCAACAGCCACAGCTCCAAACCGTTCAGACCTTTACTCATTCTGAGAATCCCTCAAATCCTATCCTACAGATTGCTTCATCAGCCTCTGCCTACAGTACCAAATATGatcattcttctcctccatattCTGCAACTGGTTGTGCTGAAAAGAATAAGAATCTGGTTGGaaacaaaaggaagagaaaCAATGACAGGcttaaagagaaaggaaatgaaGTTATCCATGTAAGGGCAAAGAGAGGCCAAGCAACTGATAGCCACAGTTTAGCAGAAAGGGTagtaattttagtccctttttttttttgtgcatgcTTTTTGTTGGATTGTGTCAAAAAGCTATCATTCACAACCCATTATGGGAtccaataa 447 0.3289 MSKVENYTLTNQGLIMPFSNNDNLLDQQPQLQTVQTFTHSENPSNPILQIASSASAYSTKYDHSSPPYSATGCAEKNKNLVGNKRKRNNDRLKEKGNEVIHVRAKRGQATDSHSLAERVVILVPFFFCACFLLDCVKKLSFTTHYGIQ 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1259 148 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 12 119 IPR024097 GO:0006355
Ssu2g1259 148 PANTHER TRANSCRIPTION FACTOR BHLH75 12 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1259 Ssu-Chr2 54581682 54582263 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1259 86 119 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G48560 67.647 3.01e-08 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1259 - - aprc:113869931 194.126
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1259 2 54581682 54582263 Ssu2g1259 2 54581682 54582263 ECH
Ssu2g1259 2 54581682 54582263 Ssu5g3364 5 83598133 83599848 ECH
Ssu2g1259 2 54581682 54582263 Ssu3g0244 3 4364514 4368053 ECH