Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1255 ATGGAGGATCAAATCCACGGTCACACTAAAAGAATAAACCCCAATTCCCCCACGTGTTTAAAACTCTTCGGCTTCAGCGTGCACGAAGATCTGGTGGACGATGAAGCGGAAGCAGCCACGCTCGAAGACGCGTCGGATTCAACCACCAAGCCCACGTCACCGGACTCCGGCGGCGGCGCCGGGTTTCCGCCCTCTTCCGGCGACCGGAAATACGAGTGCCAGTACTGTTGCCGAGAGTTTGCGAACTCGCAAGCTCTCGGCGGACACCAAAACGCGCACAAGAAAGAGAGGCAACAGCTGAAGCGCGCGCAGTTACAAGCCACGCGAAACGCCGCCGTTTCGTTCGTTCGGAACCCGATCATCTCCGCCTTCGCGCCGCCGCCGCACCTGCTGGCGACGCCGGGACAAGTGGTGATGCCAGCGGCCCCGCCGTCGTGGGTATACATGCCGCCACGTGCCGCGCCTCCTCCCTTCCACGTGTCAGTTTCACACGGGTGCGTGTTCCCCTCGGCGAACAGCGGCGTCACTAACTGTAACGGTGGTAATAACTATAGCATTGTAACGGGGGTGAGATCCGCGGGTGCAGGGATGTTGCCGTATGTTGGCGGAGTAGGGGATTCGTCGCCCGCATTTTCCACGATGGGCTCCCAAGTACAGACCCGGGCCCACTACGGGAGGGTTGATGGGCCATCATTGAATAGGCTCCCTAAAGGGGATGTGGGGCCCAATTTCGATGACGGGTTCGGCTTGGACTTGCACCTTAGCCTAGCCCCACCATGA 780 0.6 MEDQIHGHTKRINPNSPTCLKLFGFSVHEDLVDDEAEAATLEDASDSTTKPTSPDSGGGAGFPPSSGDRKYECQYCCREFANSQALGGHQNAHKKERQQLKRAQLQATRNAAVSFVRNPIISAFAPPPHLLATPGQVVMPAAPPSWVYMPPRAAPPPFHVSVSHGCVFPSANSGVTNCNGGNNYSIVTGVRSAGAGMLPYVGGVGDSSPAFSTMGSQVQTRAHYGRVDGPSLNRLPKGDVGPNFDDGFGLDLHLSLAPP 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1255 259 ProSiteProfiles Zinc finger C2H2 type domain profile. 71 98 IPR013087 -
Ssu2g1255 259 MobiDBLite consensus disorder prediction 39 65 - -
Ssu2g1255 259 Gene3D Classic Zinc Finger 62 118 - -
Ssu2g1255 259 ProSitePatterns Zinc finger C2H2 type domain signature. 73 93 IPR013087 -
Ssu2g1255 259 PANTHER ZINC FINGER PROTEIN GIS3 13 258 - -
Ssu2g1255 259 PANTHER ZINC FINGER PROTEIN 5 13 258 IPR044299 GO:0010090
Ssu2g1255 259 SUPERFAMILY beta-beta-alpha zinc fingers 67 98 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1255 Ssu-Chr2 54425420 54426199 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1255 20 258 C2H2 Transcription Factor Family AT1G68360 45.926 5.01e-53 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1255 - - pvu:PHAVU_002G082900g 348.591