Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1253 ATGTTGGGGAAGGGCCCGTTTGGGACGGCTTATAAGGCGGTGCTTGATGACGGGACCGTTGTTGCTGTGAAGAGGCTGAAGGATGTGAGTGTGCGGGGAAAGAGGGAGTTCCAGCAGCGAATGGAAGTGCTTGGAAGCTTGAGACACTGCAATGTTGTTAGTTTGAGGGCTTACCATTTCTCCCAAGATGACAAGTTGCTCGTGTCTGATTTCATGCCCAATGGCAGCTTGTCCTGGCTCCTCCACgGTAACCGAGGACCGGGACGAACCCCATTGGACTGGACCACGAGGCTCAAGATAGCAGCTGGAGCGGCACGAGGCGTGGCCTTCATTCACAACTCGTGCAACTCCCATTCCCCCAATCATAAACTCACCCACGGTAACATCAAATCCACGAACGTCCTCGTCGACGTGGCGGGCAACGCGCGCGTGGCGGATTTCGGGCTCTCCATCTTCGCGGGCCCCTCGAGTTCAAGATCCAACGGCTACCGTGCGCCGGAGGCACCGGACGGTCGGAAACAGACCCAGCAGTCCGACGTGTACTCCTTCGGCGTTCTCCTGATGGAGATGCTGACGGGGAAGTGCCCCTCCGCCGTGGACGGCGGCGCTGCGGCGGCGGAGGACCTCCCTAGGTGGGTCCGGTCGGTGGTGAGGGAGGAGTGGACTGCTGAGGTGTTCGATCTGGAGCTTATGAGGTATAAGGATACTGAGGAGGAGATGGTGGCGCTGTTGCAGATAGCTATGGCGTGCACTGCGACCGCACCTCATCAACGGCCCAGGATGAGCCACGTGGTCAAGATGATCGAGAAGGTGCGTGGGGTCGACGTATCGCCATGTCATGACGCGTTCGACTCGGTGTCTGACTCACCTGCCGTGTCTGAAGATGCGTGTATAGGAGGTGCAGCTAGTGGTCAATGA 918 0.5861 MLGKGPFGTAYKAVLDDGTVVAVKRLKDVSVRGKREFQQRMEVLGSLRHCNVVSLRAYHFSQDDKLLVSDFMPNGSLSWLLHGNRGPGRTPLDWTTRLKIAAGAARGVAFIHNSCNSHSPNHKLTHGNIKSTNVLVDVAGNARVADFGLSIFAGPSSSRSNGYRAPEAPDGRKQTQQSDVYSFGVLLMEMLTGKCPSAVDGGAAAAEDLPRWVRSVVREEWTAEVFDLELMRYKDTEEEMVALLQIAMACTATAPHQRPRMSHVVKMIEKVRGVDVSPCHDAFDSVSDSPAVSEDACIGGAASGQ 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1253 305 MobiDBLite consensus disorder prediction 157 176 - -
Ssu2g1253 305 CDD STKc_IRAK 2 270 - -
Ssu2g1253 305 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 1 287 - -
Ssu2g1253 305 Gene3D Phosphorylase Kinase; domain 1 2 72 - -
Ssu2g1253 305 Gene3D Transferase(Phosphotransferase) domain 1 73 282 - -
Ssu2g1253 305 ProSiteProfiles Protein kinase domain profile. 1 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g1253 305 Pfam Protein tyrosine and serine/threonine kinase 2 267 IPR001245 GO:0004672|GO:0006468
Ssu2g1253 305 PIRSF ILK 1 277 - -
Ssu2g1253 305 PANTHER - 1 287 - -
Ssu2g1253 305 SUPERFAMILY Protein kinase-like (PK-like) 1 268 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1253 Ssu-Chr2 54368705 54373181 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1253 1 303 Receptor kinase-like Gene Family AT1G68400 72.168 8.29e-155 446
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Ssu2g1253 PK_Tyr_Ser-Thr 1.1e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1253 - - gmx:100811051 482.641