Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1250 ATGGCCTCTTGTGAAGGGAGGCGGCGTCATCATGATCTTGTGCCTCTTGCTGCATTGCTTACCAGAGAGATGAAGAATGAGAAGATGGAGAAGCCCACAGTGCGGTACGGGTATGCTGCTCAATCTAAAAAAGGGGAGGATTACTTCCTAATTAAGACTGATTGTCGGCGAGTTCCTGGGAATTCTTCATCACCGTTTTCTGTATTCGCGATCTTTGATGGGCACAATGGAAATGCTGCAGCCATTTTTACTCGGGAGCATTTGTTAAATCATGTGTTGGGTGCTCTCCCTCGAGGGCTTGGACGAGAGGAGTGGCTACAAGCTTTGCCCCGGGCATTGGTTGCTGGGTTTGTGAAGACTGACAAGGAATTTCAGAGAAGAGGAGAAACTTCTGGAACCACAGCCACGTTTGTGATAGTGGATAGGTGGACTGTAACCGTTGCATCTGTGGGAGATTCCCGTTGTATATTAGATGTGCAGGGTGGTGCTGTTACCAACTTAACTGTTGATCACAGACTTGAGGAGAATATTGAAGAGAGGGAACGTGTTACTGCAAGTGGAGGTGAAGTTGGAAGGCTTAGCATTGTTGGTGGTGTTGAGATTGGTCCACTTCGTTGCTGGCCTGGGGGTCTATGCCTTTCTAGGTCAATAGGAGACATGGATGTTGGGGAGTTTATAGTTCCAGTACCATATGTCAAACAAGTGAAGCTATCAAAGGCTGGTGGGAGGCTTATAATTGCTTCTGATGGTATCTGGGATGCTCTATCATCTGAAATGGCAGCAAAATCTTGTCATGGTTTGCCTGCTGAACTTGCTGCGAAGCAGGTTGTAAAGGAAGCACTAAGGACAAGAGGGTTAAAGGATGATACAACTTGCATTGTAGTTGATATAATTCCACCTGATAATGGATTgccaccgccaccgccacctCCCCCCAAAAAGCGGAACAAGTTGAGTGCTCTTTTGTTTGGGAAGAGGTCTCATGACTCGGCTGGTAAGCTGTCAGCAAAGCTTTCAGCTATAAATATAGTGGAGGAATTATTTGAAGAAGGATCAGCAATGCTTGCTGAAAGATTAGGAAACGATGACAACTCGAGTCAATCAACATCTGGCATTTTCGTATGTGCTGTGTGCCAGGTTGACCTTGCTTCAAGCGAGGGCATCTCTGTTCATGCAGGTTCCATTTTCTCCGCCAGCTCAAAGCCATGGCAAGGTCCTTTTCTATGTGCTGATTGTCGCAGCAAGAAGGATGCTATGGAAGGAAAACGCCCTAGTGGAGTTAAAGTGTCATAG 1293 0.4555 MASCEGRRRHHDLVPLAALLTREMKNEKMEKPTVRYGYAAQSKKGEDYFLIKTDCRRVPGNSSSPFSVFAIFDGHNGNAAAIFTREHLLNHVLGALPRGLGREEWLQALPRALVAGFVKTDKEFQRRGETSGTTATFVIVDRWTVTVASVGDSRCILDVQGGAVTNLTVDHRLEENIEERERVTASGGEVGRLSIVGGVEIGPLRCWPGGLCLSRSIGDMDVGEFIVPVPYVKQVKLSKAGGRLIIASDGIWDALSSEMAAKSCHGLPAELAAKQVVKEALRTRGLKDDTTCIVVDIIPPDNGLPPPPPPPPKKRNKLSALLFGKRSHDSAGKLSAKLSAINIVEELFEEGSAMLAERLGNDDNSSQSTSGIFVCAVCQVDLASSEGISVHAGSIFSASSKPWQGPFLCADCRSKKDAMEGKRPSGVKVS 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1250 430 MobiDBLite consensus disorder prediction 298 317 - -
Ssu2g1250 430 SMART PP2C_SIG_2 30 297 IPR001932 -
Ssu2g1250 430 SUPERFAMILY PP2C-like 31 297 IPR036457 -
Ssu2g1250 430 Gene3D - 34 301 IPR036457 -
Ssu2g1250 430 SMART PP2C_4 25 295 IPR001932 -
Ssu2g1250 430 CDD PP2Cc 36 297 IPR001932 -
Ssu2g1250 430 Pfam Protein phosphatase 2C 61 282 IPR001932 -
Ssu2g1250 430 PANTHER ALPHABET, ISOFORM E-RELATED 3 429 - -
Ssu2g1250 430 ProSiteProfiles PPM-type phosphatase domain profile. 28 297 IPR001932 -
Ssu2g1250 430 MobiDBLite consensus disorder prediction 300 315 - -
Ssu2g1250 430 PANTHER PROTEIN PHOSPHATASE 2C 15-RELATED 3 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1250 Ssu-Chr2 54305382 54308862 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1250 1 429 PP2C-type Phosphatase Gene Family AT1G68410 78.899 0.0 692
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1250 - - gmx:100779571 752.666