Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1249 ATGAGGAGCAATGACCAAACTTCTGGTGCTAGTCTCAACATTAGGGATTTAATATGCAACGCTGGTGCGGGTGCCGCTGCTGGGGCAATAGCGGCTACATTTGTGTGTCCATTGGATGTGATCAAGACTAGGCTACAAGTTCATGGCCTTCCTCCTGGGCAGAAAGGTAGTGTTATTGTCACAAGCTTGCAAAATATAGTAAGGAATGAAGGCTTCCGGGGAATGTACCGTGGCCTTTCACCAACAATACTGGCATTACTTCCAAACTGGGCAGTTTACTTCGCAAGTTATGAGCAACTAAAGGGCCTGCTTCGTTCAAGTGCAGATGGTTGCAACGAACTCACAACTACTGGAAATATTATAGCTGCTGCTGGTGCTGGGGCAGCAACAGCAATTTGTACAAATCCATTGTGGGTTGTTAAGACAAGACTTCAAACGCAAGGAATGAGGCCTGGTGTTGTTCCTTACAAAAGTGTTCTTTCTGCTTTGACAAGGATTATGCATGAGGAAGGTATACGAGGCCTATATAGTGGCATTGTTCCTTCATTGGCTGGCGTAAGTCATGTTGCAATTCAATTTCCAGCATATGAAAAGATCAAGTCATACGTGGCAGAAAAAGATAACACAACTGTTGACAAGCTAACTCCTGGCAGTGTTGCCATTGCGTCGTCTCTTTCAAAAGTATTTGCCTCTGTAATGACTTATCCACATGAGaTAATACGATCCCGGCTGCAAGAGCAAGGCCAGGCCAAAAATGTAGGGGTCCAATATGCAGGGGTTATAGACTGTACTAAGAAGGTGTTTCAAAAGGAAGGCATTCCAGGGTTTTATCGTGGTTGCGCGACCAATCTATTAAGAACAACTCCATCTGCTGTTATTACATTCACTAGTTATGAGATGATACACAGGTTTTTGGAGCGAGGTATGCCTCAGGACAAAGGGTATCCGCAAAGCCGCTCTAAATCCAATGAACTCAACAAGCCCCGGCCGGAAGCTGGTGGCACTGACAGGGGGCAGCCACCATCTCAGTCTAACATGAAAGCTTCATCAATTCCTCTGGGCAACAAAGAGCAGCTAACAAGACATTGA 1089 0.4545 MRSNDQTSGASLNIRDLICNAGAGAAAGAIAATFVCPLDVIKTRLQVHGLPPGQKGSVIVTSLQNIVRNEGFRGMYRGLSPTILALLPNWAVYFASYEQLKGLLRSSADGCNELTTTGNIIAAAGAGAATAICTNPLWVVKTRLQTQGMRPGVVPYKSVLSALTRIMHEEGIRGLYSGIVPSLAGVSHVAIQFPAYEKIKSYVAEKDNTTVDKLTPGSVAIASSLSKVFASVMTYPHEIIRSRLQEQGQAKNVGVQYAGVIDCTKKVFQKEGIPGFYRGCATNLLRTTPSAVITFTSYEMIHRFLERGMPQDKGYPQSRSKSNELNKPRPEAGGTDRGQPPSQSNMKASSIPLGNKEQLTRH 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1249 362 SUPERFAMILY Mitochondrial carrier 16 300 IPR023395 -
Ssu2g1249 362 ProSiteProfiles Solute carrier (Solcar) repeat profile. 15 103 IPR018108 -
Ssu2g1249 362 MobiDBLite consensus disorder prediction 309 362 - -
Ssu2g1249 362 MobiDBLite consensus disorder prediction 337 362 - -
Ssu2g1249 362 Gene3D Mitochondrial carrier domain 16 305 IPR023395 -
Ssu2g1249 362 PRINTS Mitochondrial carrier protein signature 20 33 IPR002067 GO:0055085
Ssu2g1249 362 PRINTS Mitochondrial carrier protein signature 78 98 IPR002067 GO:0055085
Ssu2g1249 362 PRINTS Mitochondrial carrier protein signature 223 245 IPR002067 GO:0055085
Ssu2g1249 362 PRINTS Mitochondrial carrier protein signature 129 147 IPR002067 GO:0055085
Ssu2g1249 362 PRINTS Mitochondrial carrier protein signature 33 47 IPR002067 GO:0055085
Ssu2g1249 362 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 11 313 IPR044712 GO:0006862|GO:0055085
Ssu2g1249 362 Pfam Mitochondrial carrier protein 20 105 IPR018108 -
Ssu2g1249 362 Pfam Mitochondrial carrier protein 114 205 IPR018108 -
Ssu2g1249 362 Pfam Mitochondrial carrier protein 215 306 IPR018108 -
Ssu2g1249 362 ProSiteProfiles Solute carrier (Solcar) repeat profile. 114 202 IPR018108 -
Ssu2g1249 362 ProSiteProfiles Solute carrier (Solcar) repeat profile. 214 304 IPR018108 -
Ssu2g1249 362 PANTHER NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1, CHLOROPLASTIC 11 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1249 Ssu-Chr2 54288943 54292854 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1249 13 356 Chloroplast and Mitochondria Gene Families AT1G25380 65.819 2.49e-148 421
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1249 K15115 - gmx:100797064 624.394