Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1248 atgaCACAAACCAAACAAGGAGCGTTGTTTCCTACTTCCACTCCCTTCACTTTTGACTCTGCATTTGTGAAATCTAAGATGGTTCAACACACTTTCTTGCGTTTCCTTATTCTGTGTTACTCTCTGCTAGTGCTTCCTCTCTTGGCCGAAGATGAAAAGAAATACCAAGGGAAGTGCCCAGCATCTTTTCAATGCGGTCGATTTGGGGAGCTCCAGTTTCCATTCACCAACACAAGCAACATGGGCTGTGGTTTGCCCATAACGGGTTGTGATGATCAAAATGCATCTAAGAAAGTTCAATCATCAGACCGAACATCGTATAAATTAAAATCCGTTGATGGGATCAATTCAATTTCTGTCATAGACCAACACCTTCGAAAGCTCTTGAACTCCAAAAGTTGCGAAGCCTTCAATTATGATCTTAATGCAACCCTTCCTCCGAGCTCCCCCATGCTGCATTTTCAGGTCGAAATGGAACACAGTATAACCTTGTTAAGATGCAACCACCCCCTTGGTAATAGCACGAAATACATAAATCATATAAGATGTAACCACTCCGATATCTACTACCCTTCTCAATATTTTGGAACGGATGACATGTCTGAACATGCGTGTTCAACCATCCAGCTTCCAATTGACTCATCGACCCCTGTGGACAATTCCACAGACCTGTACAGTTTGTTACATGCTAGATTCCGGATGCTTATATCGGTATCAGAGGATTGTCGTAAGTGTCAGGAAAATGGAATTCAATGTCAAGTTGACAACTTTCATTGTGAGAGTACCGATGATGTTCAAAGATTCTTTTTTTATGCTACAGGTTTAGTGGCTATTGGATTTGTAAGCGTGATTATATCAGGTTTGATAATTCTACTTTTCCATAAATGGAGAAACAGTCGTTCGGACAACCAAAAACAATCACAAAAAATTCATTGTAGTCCTAACTCAAATCCAATCCCAGAGAGTGGCAGCAACATCTTTGGGGTCCCTGTCTTCTCCTATACAGAGCTAGAGAAAGCAACAATCAATTTTGATGAAGCTAGAGAACTTGGAAGTGGAGGCTTTGGGACTGTTTACTATGGAAAGCTCAGTGATGGACGGGAAGTAGCTGTCAAGCGCCTATATGAGCACCATTATAGACGGATGGAACAGTTTATGAATGAAATAGAGATCCTCACACGTTTGCGACACAGAAATCTTGTGTCCCTTTATGGCTGCAGTTCGCGGCACAGCCGCAAGCTACTGCTTGTGTATGAATATATACCAAATGGTACTGTTGCTTGCCATCTCCATGGTGATTTAGTAAAGGCTGGCTTCTTGACGTGGCCTATACGAATGAAAATTGCCATAGAAACTGCTAGTGCATTGACTTATCTGCATGCTACTGGCATCGTTCACCGGGATGTGAAAACCAACAACATTCTACTCGACaataatttttgtgttaaaGTTGCAGATTTTGGGCTTTCAAGACTGTTCCCCAACAATGTCACCCATGTGTCCACGGCTCCACAAGGAACCCCAGGGTACGTGGACCCAGCATATCACCAATGCTACCAGCTAACAAGCAAGAGTGATGTATATAGTTTTGGGGTTGTGCTGGTTGAGTTAATATCATCTCTGAAAGCAGTTGATATGACCAGGGATAGCGATGAGATTAACTTGTCAAATCTAGCCgtaaagaagataaaaaatggaACATTTAGTGAACTGGTAGATCCTTCCCTTGGCTTTGAGttagataaagaaattaaaaggaaaacattttcAGTGGCAGAATTGGCTTTTCAATGTTTGCGAGAGGACAAGGATATGAGACCTTCCATGGTGAAAGTTTTGGAGGCATTGAAGAGAATTGAAGGTGGGGAGGATGAGTCAAGCAACTAG 1887 0.4112 MTQTKQGALFPTSTPFTFDSAFVKSKMVQHTFLRFLILCYSLLVLPLLAEDEKKYQGKCPASFQCGRFGELQFPFTNTSNMGCGLPITGCDDQNASKKVQSSDRTSYKLKSVDGINSISVIDQHLRKLLNSKSCEAFNYDLNATLPPSSPMLHFQVEMEHSITLLRCNHPLGNSTKYINHIRCNHSDIYYPSQYFGTDDMSEHACSTIQLPIDSSTPVDNSTDLYSLLHARFRMLISVSEDCRKCQENGIQCQVDNFHCESTDDVQRFFFYATGLVAIGFVSVIISGLIILLFHKWRNSRSDNQKQSQKIHCSPNSNPIPESGSNIFGVPVFSYTELEKATINFDEARELGSGGFGTVYYGKLSDGREVAVKRLYEHHYRRMEQFMNEIEILTRLRHRNLVSLYGCSSRHSRKLLLVYEYIPNGTVACHLHGDLVKAGFLTWPIRMKIAIETASALTYLHATGIVHRDVKTNNILLDNNFCVKVADFGLSRLFPNNVTHVSTAPQGTPGYVDPAYHQCYQLTSKSDVYSFGVVLVELISSLKAVDMTRDSDEINLSNLAVKKIKNGTFSELVDPSLGFELDKEIKRKTFSVAELAFQCLREDKDMRPSMVKVLEALKRIEGGEDESSN 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1248 628 SMART serkin_6 344 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g1248 628 ProSitePatterns Serine/Threonine protein kinases active-site signature. 464 476 IPR008271 GO:0004672|GO:0006468
Ssu2g1248 628 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 41 626 IPR044652 -
Ssu2g1248 628 Gene3D Transferase(Phosphotransferase) domain 1 421 625 - -
Ssu2g1248 628 Gene3D Phosphorylase Kinase; domain 1 320 420 - -
Ssu2g1248 628 SUPERFAMILY Protein kinase-like (PK-like) 327 614 IPR011009 -
Ssu2g1248 628 ProSitePatterns Protein kinases ATP-binding region signature. 350 372 IPR017441 GO:0005524
Ssu2g1248 628 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 41 626 - -
Ssu2g1248 628 ProSiteProfiles Protein kinase domain profile. 344 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g1248 628 Pfam Protein kinase domain 345 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1248 Ssu-Chr2 54278959 54281957 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1248 63 625 Receptor kinase-like Gene Family AT1G25390 49.033 7.17e-162 476
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Ssu2g1248 Pkinase 1.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1248 - - rcu:8271488 590.112