Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1247 ATGGCTGCCTACTTCATGCTTGGCTTCCTTTTTCTACTCTCTTGTTTCATGCTTCTTGTCTTGGCTGCAGTTGATGAGGAATGTGGAAAGCCTCAACACTGTGGATATCTGGGGGAAATCTCCTTCCCCTTCACAACAAGTCCCAGCCAAGAATGTAGTGGCTTGCTGCTAATACAGGGCTGTCAAGACGACAGTGCAGATAAAGAAATCCAACTGACAGACCGTAATTGGTATAAAATTGATAGCATATTCCGCACCCATAATTTCGACCTCGAGTACCTTTCAATTTTCATCCATTACCCCGATTTTGACGCCGTATTTGCTCCAGAGCCACCTAAAAAGCCTTTTAAGATAAGTAGAAATATTACCTTCTCCAAATGCATTCGGAACTCCAATGACCCAACTCATACCATGTCCTTGTATAGAAACTGTCCTTACTACGATATCTACTTCAATTCTTCCTCTGAACATGATGATCCCGACTCACCCTTACCCATGCCTATCCTTCCATTCGCATGTTTACTTGTCTCATTTCTTCCACTTGGACAAGTAACCATTCCCACTTGCCCTTCATATACATTCGTATTTTCTCTTCTCGAAATTAAATTAGACATACCCGAAGATTGTAAATCCTGTTCTTCACACGAAGATTGTAAACCCTGTTCTTTACCCCGTTGTTTTAACTTTGATGGACAAAATCTCACTTGTATCCATGATGATGAACAAAAACTTAATCCTGGGCCGGCTAATCCACAGAAACCTGCTGGGCCAAACTCCGAGAAGCAGAATTCGAAGGCTATGAAAATAGGTTTATCTGTTGGAATACCAAGCGCGGTTGCAGTTGTTGCCTTGGTTGTTATTCTTTTGCTTTACAAAGGAAGAAACAAATATTCAGGCCTCCAAAACCAATCAAGAAGCGCTTATTCTGCTTCCTTCAGAGAAAGTGGAGCTGTCTACTTTGGAATCCCTGTCTTCTCCTATGAGGAGCTCCAAGAGGCAACGAACAATTTTGATCAAGCAAGGGAGCTTGGAGAAGGAGGCTTTGGAACTGTTTACTACGGAAAGCTTCGAGATGGGCGTGAAGTTGCAGTGAAGCGCCTGTTCGAGCGCAACTACAGGCCAGTGGAGTCATTCATCAATGAAATTCAGATCCTCACACGCCTGCGCCACAGAAACCTTGTGTCCCTCTATGGCTGCACTTCGCGTCACAGCCGTGAGTTACTGCTAGTATATGAGTACATCCCAAATGGCACTGTTAGTTCCCATCTCCATGGTGATCAAACAAAGCCATGCTTATTGCCATGGCTTGTGAGAATGAAAATTGCCATAGACACTGCTAGTGCATTGGCTTATCTCCACGCTTCAGACATCATTCACCGGGATGTGAAAACCAGCAACATTCTCCTTGACAATGACTTTGGTGTTAAGGTTGCAGATTTTGGTCTTTCAAGACTGTACCCTGATGATGCCACACATGTCTCCACAGCTCCACGGGGAACTCCAGGTTATGTTGATCCGGATTATCGCCTATGCTACCAGCTTACAACCAAGAGTGATGTATATAGCTTTGGGGTTGTGCTTGTTGAGTTAATATCATCTCTGAAAGCAGTTGATATGAACAGGAGCAGGGATGATATTAAGTTGGCAAATCTTGCCATAAGAAGATTCAGAAGGGGGCAGTTTGTGAGTTGGTTGATCCTTGCCTTCATTTCCAGTCagatgagaaattaa 1731 0.435 MAAYFMLGFLFLLSCFMLLVLAAVDEECGKPQHCGYLGEISFPFTTSPSQECSGLLLIQGCQDDSADKEIQLTDRNWYKIDSIFRTHNFDLEYLSIFIHYPDFDAVFAPEPPKKPFKISRNITFSKCIRNSNDPTHTMSLYRNCPYYDIYFNSSSEHDDPDSPLPMPILPFACLLVSFLPLGQVTIPTCPSYTFVFSLLEIKLDIPEDCKSCSSHEDCKPCSLPRCFNFDGQNLTCIHDDEQKLNPGPANPQKPAGPNSEKQNSKAMKIGLSVGIPSAVAVVALVVILLLYKGRNKYSGLQNQSRSAYSASFRESGAVYFGIPVFSYEELQEATNNFDQARELGEGGFGTVYYGKLRDGREVAVKRLFERNYRPVESFINEIQILTRLRHRNLVSLYGCTSRHSRELLLVYEYIPNGTVSSHLHGDQTKPCLLPWLVRMKIAIDTASALAYLHASDIIHRDVKTSNILLDNDFGVKVADFGLSRLYPDDATHVSTAPRGTPGYVDPDYRLCYQLTTKSDVYSFGVVLVELISSLKAVDMNRSRDDIKLANLAIRRFRRGQFVSWLILAFISSQMRN 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1247 576 Pfam Protein tyrosine and serine/threonine kinase 340 533 IPR001245 GO:0004672|GO:0006468
Ssu2g1247 576 ProSitePatterns Protein kinases ATP-binding region signature. 343 365 IPR017441 GO:0005524
Ssu2g1247 576 SMART serkin_6 337 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g1247 576 MobiDBLite consensus disorder prediction 240 262 - -
Ssu2g1247 576 ProSitePatterns Serine/Threonine protein kinases active-site signature. 457 469 IPR008271 GO:0004672|GO:0006468
Ssu2g1247 576 Gene3D Phosphorylase Kinase; domain 1 313 413 - -
Ssu2g1247 576 SUPERFAMILY Protein kinase-like (PK-like) 316 560 IPR011009 -
Ssu2g1247 576 ProSiteProfiles Protein kinase domain profile. 337 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g1247 576 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 25 561 IPR044652 -
Ssu2g1247 576 Gene3D Transferase(Phosphotransferase) domain 1 414 574 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1247 Ssu-Chr2 54273760 54276256 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1247 250 557 Receptor kinase-like Gene Family AT1G25390 62.581 2.13e-123 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Ssu2g1247 PK_Tyr_Ser-Thr 3.8e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1247 - - var:108334729 642.114