Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1234 ATGGAGGCGCAACCCACTCCTTCGCCGCATCCGAACTACCCGGACTCCGTGGACTCCTCCCCGCGCGCCTCCTGGGACGAGCCCTTCACTCCTCCGACCGCCGCCAAGCTCCGCCTGATGTGCAGCTACGGCGGCCACATCGTGCCCCGCCCGCAGGACAAGTCCCTCTGCTACGTCGGCGGCGACACCCGCATCGTGGTGGTCCCCCGCCACACGTCCCTCTCCGACCTCTCCACGCGCCTCTCGAAGTCGTTCCCCCACGCGCGCCCCTTCGTCCTCAAGTACCAGCTCCCCGGCGAGGACCTCGACTCCCTCGTCTCCGTTACCACCGACGAGGACCTCGAGAACATGATCGACGAGTACGATCAGCGCGCCGAAAACTCCTCCTCCAACAACAAGCCCTCGCGGATTCGCCTCTTCCTGTTCCCGGCCCAGGTCGTCGGGCCCGCGGGCCTGGGCTCCGCCAAGTCCGAGGAGTGGCTCAGCGGATCCCTCGACGGGGGCCTGTCGGAGTCCGCGTCGGTGACCTGCCTCCTCGGACTCAACGACGAGGTTGCCTCCAGCGGGAACGGGAAGGTTTTGAAGGAGGTGGTTGCGGATTCGCCTGTGCTGGAGAGCAATTCGTCTTTCGGGTCCGCTTCGTCGGTGGCGAATCTGCCGCCGATAAAGGTTCACGTGGAGGATGGGGTTAGGGTGCCGCAGGATCAGAAGGGGGTGGGGCTTGAGGAACAGTTTGCTCAGTTCGGTGTGGGACAGAAGCAGGAAGAGGCCTTTGTTCTACCGCCGCCGCCGGCGACGGAATTCGCGGCGACCCAGCTTGTCTCCGACGACGAGAGATCCGATCATGGGGTCCCTTTGGGGTATAGAAAACTGCCAACCCCACAGCCTCAGCCTCCCCAATTTCAACAGAAATCAGTTGGGGTTGTTGATTTGCCTTCCCCTGATTCACTTTCAAGTGATAGTAGTCTTTCAAATGCAATGTCATGCCCAAAACCAGCAATCTATCAAGACCAAGTTCAAATTCAATCCGGAAATTCTCAGGTTCCTAGTAATACCTCGGTTGATCTGAAGCTCAATGTGACAGATCCACATGGTTGGATTCAGATGCAGCAGCATGTACAGGAACCTGGATATGTTTTGCAGCCACAATTCGATCAACAACTGccgcagcagcagcagcaacatCAAGCTCAACAGCCGCAGCAGTATATACACAACACACATTTAATTCACCATACCCCTGCAGGGCCTGTGCCAATCCCTGCTGCATACTATCCTGTGTATCAGCAACAGCTCCATACCCAGCATCACCATCACCTTGATCAACAATACCCGGTTTACTATGTGCAGGCAAGACAAGCCCAAGCATACAACTTGTCTGTGCAACCGGCTAATGTAGCTGAATCTGCCACAACTATCCCTTCTAGCCAATCCCAAAATCTGCCAAATTATGCTGCTTACAACCCAATGAGGAATGCTCCCTTGCCTAAATCTGAAATGACTGCAGGTGCATACCGAACAGCACCTGCTACCCCTCAATTAGTTCAAGTTCCTCCTAGTAAGCATCAGCAACAATATGTTGCTTACTCTCaaattcatcatcatcatcctcaaTCAGTGCCCCCAAATTCTGCAGTACCTGCTAATTATGCTTACGACTATGCAGATCCTGCTTTTGGTCAAGTATTTTATACTCAACCTTTGCACCCTCCGTGCCTTCCCAGTACCAGACCATGA 1737 0.5429 MEAQPTPSPHPNYPDSVDSSPRASWDEPFTPPTAAKLRLMCSYGGHIVPRPQDKSLCYVGGDTRIVVVPRHTSLSDLSTRLSKSFPHARPFVLKYQLPGEDLDSLVSVTTDEDLENMIDEYDQRAENSSSNNKPSRIRLFLFPAQVVGPAGLGSAKSEEWLSGSLDGGLSESASVTCLLGLNDEVASSGNGKVLKEVVADSPVLESNSSFGSASSVANLPPIKVHVEDGVRVPQDQKGVGLEEQFAQFGVGQKQEEAFVLPPPPATEFAATQLVSDDERSDHGVPLGYRKLPTPQPQPPQFQQKSVGVVDLPSPDSLSSDSSLSNAMSCPKPAIYQDQVQIQSGNSQVPSNTSVDLKLNVTDPHGWIQMQQHVQEPGYVLQPQFDQQLPQQQQQHQAQQPQQYIHNTHLIHHTPAGPVPIPAAYYPVYQQQLHTQHHHHLDQQYPVYYVQARQAQAYNLSVQPANVAESATTIPSSQSQNLPNYAAYNPMRNAPLPKSEMTAGAYRTAPATPQLVQVPPSKHQQQYVAYSQIHHHHPQSVPPNSAVPANYAYDYADPAFGQVFYTQPLHPPCLPSTRP 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1234 578 Pfam PB1 domain 53 143 IPR000270 GO:0005515
Ssu2g1234 578 MobiDBLite consensus disorder prediction 300 325 - -
Ssu2g1234 578 ProSiteProfiles PB1 domain profile. 36 144 IPR000270 GO:0005515
Ssu2g1234 578 CDD PB1_UP2 40 142 - -
Ssu2g1234 578 Gene3D - 56 143 - -
Ssu2g1234 578 SMART PB1_new 51 142 IPR000270 GO:0005515
Ssu2g1234 578 MobiDBLite consensus disorder prediction 275 325 - -
Ssu2g1234 578 Coils Coil 111 131 - -
Ssu2g1234 578 PANTHER OS05G0427100 PROTEIN-RELATED 1 575 - -
Ssu2g1234 578 PANTHER EXPRESSED PROTEIN 1 575 - -
Ssu2g1234 578 SUPERFAMILY CAD & PB1 domains 53 145 - -
Ssu2g1234 578 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1234 Ssu-Chr2 53936743 53939260 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1234 34 240 MAP Kinase Kinase Kinase AT1G79570 35.577 1.17e-26 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1234 - - gmx:100805172 715.301