Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1233 ATGTTCCCTTTGGTTGTTGTGTTGCTTTCTCTTGCGTGCAATTTTCTTGTTGCACCTGTGAGCTCTGTGAACGATGAAGGCTCTGTGCTTTTGGCACTGAAGAAGTCCATCATGACAGACCCAGAAGGGTCCATGAGTAACTGGAACTCTTCTGATGACACCCCATGTTCATGGAATGGGATCACATGCAAGGACCAAAGTGTTGTCTCCATTAGTATCCCAAAGAGGCAGCTTTATGGGGCTCTTCCCTCTGAGCTAGGGTCTCTTTTACACCTCCGCCATCTGAATTTGAGGAACAACAACCTCTTTGGGAACTTGCCTGCTGGGCTCTTTGAAGCTCAGGGACTGCAAAGTTTGGTGCTTTACGGCAATTCCTTTTCTGGGTCTGTTCCAAGTGAGATTGGGAAGCTCAGGTACCTTCAAACTCTAGATTTGTCACAGAATTTCTTCAATGGGTCTTTACCTGCCACGGTAGTCCAGTGCAAGAGGCTCAGAACATTGGTTCTTAGTCATAACAATTTCACAGGTCCTCTGCCAGATGGGTTTGGTGGAGGGTTGTCTTCTCTGGAAAAACTTGACCTTTCTTTCAACCAATTCAATGGTTCAATTCCTAGTGACATGGGAAAGCTGTCAAGCCTGCAAGGCACTGTTAATTTGTCCCATAATCATTTTAGTGGTTCAATTCCAGCTAGTCTTGGGAATCTGCCTGAGAAGGTTTACATTGATCTCACTTACAACAATTTGAGTGGTCCAATACCTCAAACTGGTGCTTTGATGAATAGAGGACCAACTGCTTTTATCGGCAATTCTGGTCTGTGTGGCCCACCTTTGAAGAATCTGTGTGCCCCAGATACTCATGGTGCCAGTTCACCTTCCTCTTTTCCATTTTTGCCTGATAATTACCCACCTCAGGATGGTGATGATGGGTTTTGGAAAAGTGGGAAAAGTAAAAGGCTAAGTAAGGGTGCTTTGGTTGCCATTGTTGTGGGGGATGTAGTTGGAATTTGCCTTTTGGGTTTGCTGTTCTCTTACTGCTACTCAAGGGTTTGCGGTTTTACTCAGGATCAGGAGGAAAAAGGTTTTGACAAGGGATGGAGATTGAGGAAGGAGTGCTTATGCTTCAGGAAGGATGAATCTGAGACCCTATCTGATCATGTTGAGCAATATGATCTTGTCCCATTAGATGCTCAAGTGGCCTTTGATTTGGATGAGCTTCTCAAGGCTTCAGCTTTTGTTCTGGGAAAGAGTGGAATAGGGATTGTCTACAAAGTTGTGCTTGAAGAAGGGCTCACCTTGGCTGTGAGAAGATTAGGGGAGGGAGGTTCTCAAAGGTTTAAAGAGTTCCAAACGGAAGTTGAAGCAATAGGAAAGTTAAGGCATCCAAATATTGTTACTCTGAGAGCCTATTACTGGTCTGTTGATGAGAAGCTTCTCATCTATGATTATGTTCCCAATGGAAGCCTGGCTACAGCAATTCATGGGAAAGCTGGACTTGCCACATTTACACCACTATCTTGGTCTGATAGAGTGAAAATCATGAAGGGAATTGCGAAAGGATTGGTCTACCTGCATGAATTTAGTCCAAAAAAATATGTCCATGGAGACTTGAAGCCAGGTAACATACTGTTAGGACATAGCATGGAGCCCCGCATTTCCGATTTCGGTCTTGGACGCCTTGCTAACATTGCTGGAGGGTCTCCAACCTTGCAATCAAACCAAGTGGCCGCGGAGAAATCACAAGAAAGACAGAGGAGCTTATCCACAGAAGTTGCAACTAGTATTTTGGGAAATGGTTATCAGGCTCCAGAAACATTGAAAGTGATGAAGCCATCACAGAAGTGGGATGTTTACTCATATGGGGTGATTCTGCTAGAATTGATTACGGGAAGGTTGCCTATTGTCCAAGTGGGTAACTCAGAAATGGACCTTGTTCAGTGGATTCAGTTCTGCATTGATGAGAAGAAGCCACTCTCAGATGTGTTAGATCTGTATTTAGCTGAAGATGCAGACAAGGAAGAGGAGATCATTGCGGTTTTGAAGATTGCAATTGCTTGTGTCCATAGCAGCCCAGAAAAGAGACCCGTAATGAGGCATGTGCTTGATGTTTTGGATAGATTATCCATGTCCTCTGATTAA 2136 0.4434 MFPLVVVLLSLACNFLVAPVSSVNDEGSVLLALKKSIMTDPEGSMSNWNSSDDTPCSWNGITCKDQSVVSISIPKRQLYGALPSELGSLLHLRHLNLRNNNLFGNLPAGLFEAQGLQSLVLYGNSFSGSVPSEIGKLRYLQTLDLSQNFFNGSLPATVVQCKRLRTLVLSHNNFTGPLPDGFGGGLSSLEKLDLSFNQFNGSIPSDMGKLSSLQGTVNLSHNHFSGSIPASLGNLPEKVYIDLTYNNLSGPIPQTGALMNRGPTAFIGNSGLCGPPLKNLCAPDTHGASSPSSFPFLPDNYPPQDGDDGFWKSGKSKRLSKGALVAIVVGDVVGICLLGLLFSYCYSRVCGFTQDQEEKGFDKGWRLRKECLCFRKDESETLSDHVEQYDLVPLDAQVAFDLDELLKASAFVLGKSGIGIVYKVVLEEGLTLAVRRLGEGGSQRFKEFQTEVEAIGKLRHPNIVTLRAYYWSVDEKLLIYDYVPNGSLATAIHGKAGLATFTPLSWSDRVKIMKGIAKGLVYLHEFSPKKYVHGDLKPGNILLGHSMEPRISDFGLGRLANIAGGSPTLQSNQVAAEKSQERQRSLSTEVATSILGNGYQAPETLKVMKPSQKWDVYSYGVILLELITGRLPIVQVGNSEMDLVQWIQFCIDEKKPLSDVLDLYLAEDADKEEEIIAVLKIAIACVHSSPEKRPVMRHVLDVLDRLSMSSD 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1233 711 Pfam Leucine rich repeat N-terminal domain 24 63 IPR013210 -
Ssu2g1233 711 Gene3D Ribonuclease Inhibitor 19 79 IPR032675 -
Ssu2g1233 711 PANTHER RECEPTOR PROTEIN KINASE-LIKE PROTEIN ZAR1 4 710 - -
Ssu2g1233 711 SUPERFAMILY Protein kinase-like (PK-like) 412 703 IPR011009 -
Ssu2g1233 711 ProSitePatterns Serine/Threonine protein kinases active-site signature. 531 543 IPR008271 GO:0004672|GO:0006468
Ssu2g1233 711 ProSiteProfiles Protein kinase domain profile. 407 706 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g1233 711 Gene3D Phosphorylase Kinase; domain 1 376 482 - -
Ssu2g1233 711 Gene3D Ribonuclease Inhibitor 80 284 IPR032675 -
Ssu2g1233 711 SUPERFAMILY L domain-like 24 278 - -
Ssu2g1233 711 SMART serkin_6 412 707 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g1233 711 CDD STKc_IRAK 413 706 - -
Ssu2g1233 711 Pfam Leucine rich repeat 163 224 IPR001611 GO:0005515
Ssu2g1233 711 Pfam Leucine rich repeat 91 148 IPR001611 GO:0005515
Ssu2g1233 711 SMART LRR_typ_2 137 161 IPR003591 -
Ssu2g1233 711 SMART LRR_typ_2 89 113 IPR003591 -
Ssu2g1233 711 SMART LRR_typ_2 186 210 IPR003591 -
Ssu2g1233 711 Gene3D Transferase(Phosphotransferase) domain 1 483 711 - -
Ssu2g1233 711 Pfam Protein kinase domain 413 700 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g1233 711 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 4 710 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1233 Ssu-Chr2 53888185 53890686 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1233 1 711 Receptor kinase-like Gene Family AT2G01210 68.100 0.0 997
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Ssu2g1233 Pkinase 3.2e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1233 - - gmx:100810225 1302.35