Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1229 ATGGGGCCAGGGAACACAGACACTCGTGCGGGTGCAGACCCCAGTCCCTGTCACGAAGAAACACAATCTTTGGATTTTGATACAGAGTGTGAGGCCAAAATGACCAACTCTGCTGAAAACGGGGCAGGAGGTTCTTCTTGTGTTCAAGAAGTTGTGAAAAAGAAGCGCggtagaaaaagtaaaaaggagAAGGAGGACATGGAAAAGAAGAGGATGCTAGATGCTACTGCCATGGAAGGTGGGGTTTCCGAGCAGAGACCcagtagaagaagaaagaaagatgaCGCAATTGGTGAGTTTGAAATGTCTGACATTCAGACAGAATATGGTCTTAGGGGCCGTAAACAAGAGATGATGCCAAAAGTCAACAGGAAAAAACCTAAGTGTGGTGAAGAGGGGCCCTTAACGTGCCATCAATGTAAGAGAAATGATAAAGGCAGGGTTGTGAACTGCACAAGCTGTAACCGGAAAAGATTTTGCCTATTCTGTTTACAAGCTTGGTATCCTCATTTGAAAGAGGATGATATTGCTGAGGCATGTCCTGTGTGCCGTGGTAATTGCAATTGCAAAGCATGCTTGAGCTCTGCTGAACTTATTAAGaaaatgagaaaaaatgcAAAAACCTTTGAAGATGATAAGGTTGAACTCTCTATGTATTTGTTGCAAGTACTTCTTCCGTATTTAAGGCAGTTGGATGAAGAACAGATGATTGAGAATGAGACAGAAGCTAAGATACAAGGGCTCTCAGTCTCGGAGCTAAATATAGTTAAGGCAGATTTCTCTAAAGACGAGCGTGTGTACTGTGACAACTGCAAAACATCAATATTTGATTACCACAGAAGCTGCACAAAATGCTCTTTTGACCTTTGTCTCATCTGTTGCCGCGAGCTTCGTACTGGGCAGCTTGTAGGGGGTGCAGATCCAATTGAGTGGGATTTTGTTTGGCAAGGTCGTGGTTACTTGCATgctgaagaagaaaataaaaatgtaaaacaaaatgcatcaaatgCTGATGCTAAGCCTGAGGTTCACGAATGGTCAAGATCTAGGTGGAATACACAAAGTAATGGTAGCATTCCTTGTCCAAAAGTCGATGATGAATGTAACCATGGTTTTCTTGAGCTGAGAAGTGTATTGGGTCAACATTTTATCTCTAAGTTAGTAGGCAAAGCGAAAGAACTAGTGCAAGCATACAAGCTTCAAAATGTAGTTAAGACCCCTGACAACTTCTGTTCATGTATGAGCCTTGATAGAAACACAGATGTTAGATATAATAATGTGAGGAAGGCTGCTTCTCGTGAAGATTCCGGCGACAACTATTTATACTGTCCTAAGGCTATAGATCTACAGTACAAGGATTTAAGGCATTTTCAGTGGCATTGGGAAAAGGGGGAGCCTGTCATTGTCAGCAATGTGCTTGAATGTACATCTGGTTTAAGCTGGGAACCACTTGTCATGTGGCGTGCATTACGTCATGTAACCAATACCAAGCGTGGTCAACATTTGGATGTGAAAGCAATTGATTGCTTAGATTGGTGCGAGGGGGAAATTAATATCCACCAATTCTTTACTGGGTATACAAATGGTCGTGAGGATTGGCTTCATTGGCCTcagatattgaaattaaaagattGGCCTCCTTCTAATTTATTTGAGGAACAGTTGCCTCGTCATTGTGCTGAGTTCATATCTTCCTTGCCCTTCAAGGAATATACTGATCCTCTCAGAGGCGCTCTTAACCTTGCTGTGAAGTTGCCTGATGGTTGTCTAAAGCCAGACATGGGGCCAAAGACATACATTGCTTATGGATTTCCTCAGGAGCTTGGGCGTGGTGATTCAGTGACTAAGCTCCATTGTGATATGTCTGATGCAGTAAATATGTTGACTCATATTGCTGAAGTGAAATTGAAATCTGAGCAACTTCCTGCCATTGAGAAGTTGAAACAAAAGCACTTTGAGCAAGACAAGAGGGAGCTACTTGGTGCTGATCAGGATGTAGAAACTAATGTAGACATGCttaataatttatcttctaCCATAAATGGTTTGGACAAGCAAAATAGTGTTCATGTCATGGAACATGAAGGTGGATTATGTGATGGGAAAGAAGTTGATCAGTTTCATCGACCCTCTGGTAGTAATGAGGTTGCCATTGCTAATGAGGATGGTCTTTCATGTGGATCAGAGCTCAACGAGGttgacaaagtaaaaataaaacaagaaaatgattTGTTGTTTGGGGGGGATGCATCAGAAGGTGCTCTCTGGGATATTTTTCGGAGACAGGATGTACCAAAATTGCAGGAATATCTGAAGAAGCATTTCAGAGAGTTCAGGCATGTCCATTGCTGTCCTTTAAAGCAgGTTATTCACCCCATCCATGACCAGACCTTCTATCTGACTATGGAGCATAAGAGGAAGCTTAAGGAGGAGTATGGGATTGAGCCCTGGACTTTTATTCAGAAGTTAGGAGATGCTGTTTTTATTCCAGCTGGTTGTCCTCACCAAGTCAGAAATCTGAAgTCATGTCTCAAGGTTGCGATGGACTTTGTGTCTCCTGAAAATGTTGGGGAGTGCTTTCGTTTGGCGGAGGAATTTCGCACACTTCCAATAAATCACAGGTCGACTGAGGACAAATTGGAGGTGAAGAAAATGACAATATATGCAATGGAAGATGTTATTAGAAAGTTGGAGAAAGCAAGGTCCGGGTTAGCCAAGGTTCCAGAGTAA 2730 0.4051 MGPGNTDTRAGADPSPCHEETQSLDFDTECEAKMTNSAENGAGGSSCVQEVVKKKRGRKSKKEKEDMEKKRMLDATAMEGGVSEQRPSRRRKKDDAIGEFEMSDIQTEYGLRGRKQEMMPKVNRKKPKCGEEGPLTCHQCKRNDKGRVVNCTSCNRKRFCLFCLQAWYPHLKEDDIAEACPVCRGNCNCKACLSSAELIKKMRKNAKTFEDDKVELSMYLLQVLLPYLRQLDEEQMIENETEAKIQGLSVSELNIVKADFSKDERVYCDNCKTSIFDYHRSCTKCSFDLCLICCRELRTGQLVGGADPIEWDFVWQGRGYLHAEEENKNVKQNASNADAKPEVHEWSRSRWNTQSNGSIPCPKVDDECNHGFLELRSVLGQHFISKLVGKAKELVQAYKLQNVVKTPDNFCSCMSLDRNTDVRYNNVRKAASREDSGDNYLYCPKAIDLQYKDLRHFQWHWEKGEPVIVSNVLECTSGLSWEPLVMWRALRHVTNTKRGQHLDVKAIDCLDWCEGEINIHQFFTGYTNGREDWLHWPQILKLKDWPPSNLFEEQLPRHCAEFISSLPFKEYTDPLRGALNLAVKLPDGCLKPDMGPKTYIAYGFPQELGRGDSVTKLHCDMSDAVNMLTHIAEVKLKSEQLPAIEKLKQKHFEQDKRELLGADQDVETNVDMLNNLSSTINGLDKQNSVHVMEHEGGLCDGKEVDQFHRPSGSNEVAIANEDGLSCGSELNEVDKVKIKQENDLLFGGDASEGALWDIFRRQDVPKLQEYLKKHFREFRHVHCCPLKQVIHPIHDQTFYLTMEHKRKLKEEYGIEPWTFIQKLGDAVFIPAGCPHQVRNLKSCLKVAMDFVSPENVGECFRLAEEFRTLPINHRSTEDKLEVKKMTIYAMEDVIRKLEKARSGLAKVPE 909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1229 909 MobiDBLite consensus disorder prediction 28 44 - -
Ssu2g1229 909 MobiDBLite consensus disorder prediction 61 75 - -
Ssu2g1229 909 ProSiteProfiles Zinc finger RING-type profile. 137 184 IPR001841 -
Ssu2g1229 909 ProSiteProfiles JmjC domain profile. 574 867 IPR003347 -
Ssu2g1229 909 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 31 894 IPR045109 GO:0032454|GO:0033169
Ssu2g1229 909 MobiDBLite consensus disorder prediction 1 97 - -
Ssu2g1229 909 Pfam JmjC domain, hydroxylase 754 850 IPR003347 -
Ssu2g1229 909 SUPERFAMILY Clavaminate synthase-like 452 891 - -
Ssu2g1229 909 PANTHER - 31 894 - -
Ssu2g1229 909 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 135 197 IPR018866 -
Ssu2g1229 909 Gene3D Cupin 441 876 - -
Ssu2g1229 909 Coils Coil 320 340 - -
Ssu2g1229 909 SMART cupin_9 555 867 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1229 Ssu-Chr2 53802612 53824885 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Ssu2g1229 JmjC 9.5e-15 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1229 K15601 - gmx:100797799 1528.46