Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1222 ATGGACAATAGTTATCTGGGTCTTCTCAAACTTCGAATTAAAAGAGGTATTAATCTTGCAATTCGCGATGCAATGAAGAGACGTGCAAGCGACCCTTATATCGTCGTCAACATGGGCGATCAGACGGTTTATGACAAAGACACTTTCTCTGGGGATGACAAAATGGGTGAGGCAGATATAGACTTAAAACCATATGTTCAGTGTGTGCAGATGGGGTTGAACCAGCTCCCAAATGGTTCTTCAGTCAAGAGGATTCAACCAGATATAACTAATTGCCTTGCTGAAGAGAGCAGCTGCATTTGGCAAAATGGAAATATTATCCAAGAAATGATTTTGAGATTGAGAAATGTTGAGACTGGGGAAGTAGTTGTGGAAATTGAGTGGCTTGATGTTATTGGTTGCAAGGGCTTATCACAGCTAGAACTTTAA 429 0.4079 MDNSYLGLLKLRIKRGINLAIRDAMKRRASDPYIVVNMGDQTVYDKDTFSGDDKMGEADIDLKPYVQCVQMGLNQLPNGSSVKRIQPDITNCLAEESSCIWQNGNIIQEMILRLRNVETGEVVVEIEWLDVIGCKGLSQLEL 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1222 142 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 42 135 IPR044562 -
Ssu2g1222 142 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 4 42 IPR044562 -
Ssu2g1222 142 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 10 42 135 - -
Ssu2g1222 142 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 10 4 42 - -
Ssu2g1222 142 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 5 130 IPR035892 -
Ssu2g1222 142 Pfam C2 domain 42 64 IPR000008 -
Ssu2g1222 142 Pfam C2 domain 8 41 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1222 Ssu-Chr2 53653807 53656579 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1222 42 139 C2H2 Transcription Factor Family AT1G70790 62.000 1.08e-40 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1222 - - gmx:100784381 236.884