Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1218 ATGACTTCCCCACGCAATAAGCATCCCTTGCCCACTGCAGTCCGTTTCTTTAAGATTATCCTCACAACAAGTCTTGCACATTTAAAACTTAAACTCCCAAAAAATTTCACTAGAAAACATGGGGATGGAATGTCAAACCCGGTGTTTCTGAAGCCTCCAGATGGCACTGAATGGAAAATATATTGGACCAAGCATGATGGTGAGATTTGGTTTCAAAAGGGTTGGAAGGAGTTTGCCACATACTATTCCCTAGATCATGGGCACTTGCTGTTCTTTGAATATGAGGGAACTCCTCATTTTGATGTGCACATATTTGACAACAGTGCCCTTGAAATAGACTATCCTTCCCATGGTACTCATGATGGAAAGGACAACCATGTGCAGATTAGTGATGATTCTGTTGAAATTTTGGATGAGCAATTTTCATGCCAAAAGACTAGAGTGAAATCCACAGTGTCTTCTCCTCAACCTTGTAAGAAAATGAAGAACAGAATAACTACAAGGGTTCAAAGAAACCCCAATGGGGTAAACTTGCATCAGCATGTCCAAACTAGAAGTACTAGAACTCAAGAGGCAAAATTTATGAAGCAAAAATTAGATGAAGATGAAAGTAAAGACATTTTTAACACTGAATGCCCAAAAGTGGAGCAGTTAACTTCTACCGCTTTAAACAAAGCCACAACTTTCAGATCTAAACATCCCTCTTTCATACTTGTCATGAAGCCATACTTTATTAATGGAGATTACCTGGAAATACCACCGCATTTTgcagaaaaatatttgaagaaaacaCATGCAGTTGTCCTCCTTGAGGTCTTGGATGGGAGAACTTGGCCTGTTATTTATTCTGCTACTATAATTAATGGGGGATGGCAGAAATTTGCAtcagaaaataatttgaatgtgGGGGATGTGTGTGTTTTTGAGCTGATCCAGAAGATCCAGTGCCTTGCTTTCAAAGTTTCCATCTTTCAAGGTGCAGAGGGACCAAGTTACCCCATTTCGCAAGaTCTTTCAAAATGCTGCATAATGCATCCTTCAACTAACTGGAAAGGTGGGAGTTTAAGTCAACGATCTTCACGGTTAGAAAGCCACCTGAAGTCAAAGACCAGAGCTCTTGAAGAAGCTAGCAAATTCACATCAATAAATCCCTTTTTCATGGTCACTTTAACTCGTCTGAAGGAAAATATAACCAGGCGCCCGTATGTGCCGAGTAACTTTGTCAGAAAGTTTTTTGTAAACATGAACCCGAATGTGATGATTCAGTTTAGGAAGAAATTTTGGCCTGTAAAGCTTGCATTTAATGAATACGCTACAGGCATGCTCTGTGCTGGTTGGGCCTCATTTGCAAGAGAAAATAAACTGCAACCTAGAGATGTTTGTATCTTTGAGCTCGTCAATAGAGAAGATGCAATACttaattttcatgttttcaGAGGCCACAGTAAGGTAATGCATTAG 1461 0.386 MTSPRNKHPLPTAVRFFKIILTTSLAHLKLKLPKNFTRKHGDGMSNPVFLKPPDGTEWKIYWTKHDGEIWFQKGWKEFATYYSLDHGHLLFFEYEGTPHFDVHIFDNSALEIDYPSHGTHDGKDNHVQISDDSVEILDEQFSCQKTRVKSTVSSPQPCKKMKNRITTRVQRNPNGVNLHQHVQTRSTRTQEAKFMKQKLDEDESKDIFNTECPKVEQLTSTALNKATTFRSKHPSFILVMKPYFINGDYLEIPPHFAEKYLKKTHAVVLLEVLDGRTWPVIYSATIINGGWQKFASENNLNVGDVCVFELIQKIQCLAFKVSIFQGAEGPSYPISQDLSKCCIMHPSTNWKGGSLSQRSSRLESHLKSKTRALEEASKFTSINPFFMVTLTRLKENITRRPYVPSNFVRKFFVNMNPNVMIQFRKKFWPVKLAFNEYATGMLCAGWASFARENKLQPRDVCIFELVNREDAILNFHVFRGHSKVMH 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1218 486 Gene3D - 365 482 IPR015300 -
Ssu2g1218 486 Gene3D - 215 328 IPR015300 -
Ssu2g1218 486 SMART B3_2 386 481 IPR003340 GO:0003677
Ssu2g1218 486 SMART B3_2 16 108 IPR003340 GO:0003677
Ssu2g1218 486 SMART B3_2 236 327 IPR003340 GO:0003677
Ssu2g1218 486 CDD B3_DNA 384 479 IPR003340 GO:0003677
Ssu2g1218 486 SUPERFAMILY DNA-binding pseudobarrel domain 382 479 IPR015300 -
Ssu2g1218 486 PANTHER B3 DOMAIN-CONTAINING 357 479 - -
Ssu2g1218 486 SUPERFAMILY DNA-binding pseudobarrel domain 230 324 IPR015300 -
Ssu2g1218 486 CDD B3_DNA 234 324 IPR003340 GO:0003677
Ssu2g1218 486 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 11 325 - -
Ssu2g1218 486 Gene3D - 11 109 IPR015300 -
Ssu2g1218 486 Pfam B3 DNA binding domain 239 325 IPR003340 GO:0003677
Ssu2g1218 486 Pfam B3 DNA binding domain 16 107 IPR003340 GO:0003677
Ssu2g1218 486 Pfam B3 DNA binding domain 386 480 IPR003340 GO:0003677
Ssu2g1218 486 ProSiteProfiles B3 DNA-binding domain profile. 15 108 IPR003340 GO:0003677
Ssu2g1218 486 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 357 479 - -
Ssu2g1218 486 CDD B3_DNA 15 106 IPR003340 GO:0003677
Ssu2g1218 486 PANTHER B3 DOMAIN-CONTAINING 11 325 - -
Ssu2g1218 486 ProSiteProfiles B3 DNA-binding domain profile. 235 327 IPR003340 GO:0003677
Ssu2g1218 486 ProSiteProfiles B3 DNA-binding domain profile. 386 481 IPR003340 GO:0003677
Ssu2g1218 486 SUPERFAMILY DNA-binding pseudobarrel domain 14 108 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1218 Ssu-Chr2 53576410 53579722 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1218 367 479 B3 DNA Binding Superfamily AT3G18990 31.858 4.03e-12 65.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Ssu2g1218 B3 2e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1218 - - ccaj:109794243 658.677