Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1217 ATGACTTCCCCACGCAATAAGCATCCCTTACACGCTGCAGTCCATTTCTTTAAGATTATCCTCACAACAAGTCTTGCACATGGAAAACTTAAACTCCCAAGAAATTTCATTAGAAAATATGGAAATGGAATGTCAAACCCAGTGTTTCTCAAGCCTCCAGATGGCTCTGAATGGAAAATATATTGGACCAAGCATGATGGTGAGATTTGGTTTCAAAAGGGTTGGAAGGAGTTTGCCACATACCATTCTCTAGATCATGGGCACTTGCTGTTCTTTCGATATGAGGGAACTTCTCATTTTGATGTGCACATATTTGACAACAGCGCCGTTGAAGTAGACTATCCTTCCCATGGTACTCATGATGGAAAGGACACCCTTGTGCAGATTAGTGATGATTCTGTTGAAATTTTGGATGAGCAATGTTCATGCCAAAAGACTAGAGCGAAATCCAGAGTGTCATCTCCTCAACCtcgtaagaaaatgaaaaatagcatAACTACAAATGTTGAAAGAAGCCCCAATGGAGTAAACTTTCATCAGCATGACCAAACTAGAAGTACTAGCTCTCAAGAGGCAAAATTTATGAGGCAAACATTAGATGAAGACGAGGGTAAAGGCATTTTTAACACTGAATTCTCGAAAGTGGAGCAGTCAACTTCTATTGCTTTAAACAAAGTCACAACTTTCAAATCTAAACATCCCTCTTTCTTGCTTGTCATGAAGCCATCGTTTATTAATGGAGATTACCTGGAAATACCGCCACAATTTTCAGAACAATATTTGAAGAAAGCACATGCAGTTGTCCTCCTTGAGGTCATTGATGGCAGAAGTTGGCCTGTTATTTGTTCTGCACCTAGATTTACTGGGGGATGGCAGAAATTTGCatcagaaaataatttaaatgtggGGGATGTTTGTGTTTTTGAGCTGATCCAGAAGATCCAGAGCCTTGCTTTCAAGGTTTCCATCTTTCGAGGTGCAGAGGAACCAAGTAGCCTCATTTCACAAGATCTTTCAAAATGCAGCATAGTGTATCCTTCAACTAACTGGAGAGGTGGGAGTTCAAGTCAAATATCTTCACGGTTGGAAAGCCACTTCGAGTCAAAGATCTTACCAACCAGAGCTATTGAAGAAGCTAGCAAATTCACATCAGAAAATCCCTTTTTCATGTTCGCtttaaaattgcataaaaatataACCAGATACCCGCATGTGCCGAGTAACTTTGTCAGAAAGTATTTTGTAAACATGAACCAGAATGTAATGCTGATACAGTTTAGAAAGAAATTGTGGCCtgtaaaatttgtatttaatgaatACAATGCTTCTGGCAAGCTCTCTGCTGGTTGGCCCTTATTTTCAAGAGAAAATAAACTGCAACCTGGAGATGTTTGTATCTTTGAGCTCGTCAATAGAGAGGATGCAGCACTTGATGTGCATGTTTTCAGAGGTCACAGTAAGCATCCTTCAACTAACTGGACAAGTGAGACTTCAACTCGGACTTCAACTCAAAGATCTTCATTGTTGGAAAGCTACTACAAGTCAAAGATCTTAACAACCAGAGCACTTGAAGAAGCTAGCAAATTCACATCACAAAATCCCTTTTTCACGGTCACTTTAACCCTAAATTTGCAGGCAAATATAGCCAGATGCCCGCGTGTGCCGAGTAACTTTGTCAGCAAGTATTTTGTAAACATGAACCGGGATGTGATGATGATACAGTTTAGAAAGAAATTGTGGCCTGTAacgtttttatttaatgaatgcGATAATTCAGGCACGCTCTCTGCTGGTTGGTCCTCCTTTGCAAGAGAAAATAAACTGCAACCTGGAGATGTTTGTATCTTTGAGCTTGTCAATAGGGAAGATGCAACACTTGATCTTCATGTTTTCAGAGGAAATAGTAAGGCAATGCAATAG 1920 0.3849 MTSPRNKHPLHAAVHFFKIILTTSLAHGKLKLPRNFIRKYGNGMSNPVFLKPPDGSEWKIYWTKHDGEIWFQKGWKEFATYHSLDHGHLLFFRYEGTSHFDVHIFDNSAVEVDYPSHGTHDGKDTLVQISDDSVEILDEQCSCQKTRAKSRVSSPQPRKKMKNSITTNVERSPNGVNFHQHDQTRSTSSQEAKFMRQTLDEDEGKGIFNTEFSKVEQSTSIALNKVTTFKSKHPSFLLVMKPSFINGDYLEIPPQFSEQYLKKAHAVVLLEVIDGRSWPVICSAPRFTGGWQKFASENNLNVGDVCVFELIQKIQSLAFKVSIFRGAEEPSSLISQDLSKCSIVYPSTNWRGGSSSQISSRLESHFESKILPTRAIEEASKFTSENPFFMFALKLHKNITRYPHVPSNFVRKYFVNMNQNVMLIQFRKKLWPVKFVFNEYNASGKLSAGWPLFSRENKLQPGDVCIFELVNREDAALDVHVFRGHSKHPSTNWTSETSTRTSTQRSSLLESYYKSKILTTRALEEASKFTSQNPFFTVTLTLNLQANIARCPRVPSNFVSKYFVNMNRDVMMIQFRKKLWPVTFLFNECDNSGTLSAGWSSFARENKLQPGDVCIFELVNREDATLDLHVFRGNSKAMQ 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1217 639 CDD B3_DNA 405 483 IPR003340 GO:0003677
Ssu2g1217 639 CDD B3_DNA 534 632 IPR003340 GO:0003677
Ssu2g1217 639 Gene3D - 11 109 IPR015300 -
Ssu2g1217 639 Gene3D - 372 485 IPR015300 -
Ssu2g1217 639 Gene3D - 518 635 IPR015300 -
Ssu2g1217 639 Gene3D - 215 328 IPR015300 -
Ssu2g1217 639 Pfam B3 DNA binding domain 405 484 IPR003340 GO:0003677
Ssu2g1217 639 Pfam B3 DNA binding domain 552 633 IPR003340 GO:0003677
Ssu2g1217 639 Pfam B3 DNA binding domain 239 326 IPR003340 GO:0003677
Ssu2g1217 639 Pfam B3 DNA binding domain 16 107 IPR003340 GO:0003677
Ssu2g1217 639 PANTHER B3 DOMAIN-CONTAINING 11 325 - -
Ssu2g1217 639 SUPERFAMILY DNA-binding pseudobarrel domain 383 483 IPR015300 -
Ssu2g1217 639 ProSiteProfiles B3 DNA-binding domain profile. 388 485 IPR003340 GO:0003677
Ssu2g1217 639 SUPERFAMILY DNA-binding pseudobarrel domain 14 108 IPR015300 -
Ssu2g1217 639 ProSiteProfiles B3 DNA-binding domain profile. 235 327 IPR003340 GO:0003677
Ssu2g1217 639 SUPERFAMILY DNA-binding pseudobarrel domain 529 633 IPR015300 -
Ssu2g1217 639 ProSiteProfiles B3 DNA-binding domain profile. 537 634 IPR003340 GO:0003677
Ssu2g1217 639 PANTHER B3 DOMAIN-CONTAINING 495 632 - -
Ssu2g1217 639 CDD B3_DNA 15 106 IPR003340 GO:0003677
Ssu2g1217 639 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 371 483 - -
Ssu2g1217 639 SUPERFAMILY DNA-binding pseudobarrel domain 229 325 IPR015300 -
Ssu2g1217 639 CDD B3_DNA 234 325 IPR003340 GO:0003677
Ssu2g1217 639 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 495 632 - -
Ssu2g1217 639 PANTHER B3 DOMAIN-CONTAINING 371 483 - -
Ssu2g1217 639 MobiDBLite consensus disorder prediction 147 194 - -
Ssu2g1217 639 SMART B3_2 236 327 IPR003340 GO:0003677
Ssu2g1217 639 SMART B3_2 16 108 IPR003340 GO:0003677
Ssu2g1217 639 SMART B3_2 389 485 IPR003340 GO:0003677
Ssu2g1217 639 SMART B3_2 539 634 IPR003340 GO:0003677
Ssu2g1217 639 ProSiteProfiles B3 DNA-binding domain profile. 15 108 IPR003340 GO:0003677
Ssu2g1217 639 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 11 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1217 Ssu-Chr2 53563028 53567432 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1217 505 634 B3 DNA Binding Superfamily AT3G18990 34.074 4.00e-12 66.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Ssu2g1217 B3 3.1e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1217 - - ccaj:109791753 694.886