Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1206 ATGTCGAGCACGGCTGGTCTTGTGATCCCGTGCAAAGCTGCTGTTGCATGGGAAGCAGGGAAGCCTTTGGTGATAGAACGTGTGGAGGTGGCTCCTCCACAGGCCATGGAAGTGAGGATCAAAGTAAAATATACCTCACTTTGCCATACTGATCTATACTTCTGGGAGGCCAAGGGGCAAACTCCTTTGTTTCCACGAATTTTTGGCCACGAGGCAGCTGGAATTGTGGAGAGTGTCGGAGAAGGAGTCTCAGATCTGTGTGTTGGGGATCATGTGCTCCCCGTGTTCACCGGGGAATGTGGTGAGTGTGCACATTGCAAATCTGAGGAAAGCAACATGTGTGACCTGTTGAGAATTGATACAGACAGAGGAGTCATGCATAGTGATGGTAAAAGCAGGTTCTCCATTAATGGTACCCCAATAAACCACTTTGTTGGCACATCCACTTTTAGTGAATACACTGTGATACATTCTGGCTGCCTAGCAAAGATCAATACACAAGCACCAATGGATAAAGTCTGTGTCCTCAGTTGTGGCATCTCAACAGGATTAGGAGCAACTTTAAATGTAGCTAAACCAAAGAAGGGCTCTACAGTAGCAGTCTTTGGTCTTGGAGCTGTTGGCCTTGCTGCTGCTGAGGGAGCAAGAATTGCTGGTGCATCTAGAATTATTGGAATTGATTTGAACCCAAAGAGGTTTGAGGAAGCCAAAAAATTTGGAGTAACTGAGTTCCTGAATCCCAAGGACTATGATATACCAGTTCAAAAGGTGATTGCAGATATAACGAACGGAGGAGTGGATAGAAGTATAGAGTGCACTGGAAACATCAATGCCATGATATCCGCTTTCGAATGTGTTCATGATGGATGGGGTGTTGCTGTGCTTGTTGGAGTACCCAACAAGGATGCTGTTTTCATGACCAAACCCATTAATTTGCTCAACGAAAGAACACTCAAGGGAACTTTCTTTGGAAATTACAAGCCCAGGACTGACCTCCCTTCTGTTGTTGAAATGTATATGAACAAGAAATTAGAACTGGACAAGTTTATAACCCATAGAATTCCCTTCTCTGATATCAACAAGGCATTTGAATTAATGTTGAAAGGAGAGGGACTAAGGTGCATCATTAGTATGGAAGACTAG 1143 0.4436 MSSTAGLVIPCKAAVAWEAGKPLVIERVEVAPPQAMEVRIKVKYTSLCHTDLYFWEAKGQTPLFPRIFGHEAAGIVESVGEGVSDLCVGDHVLPVFTGECGECAHCKSEESNMCDLLRIDTDRGVMHSDGKSRFSINGTPINHFVGTSTFSEYTVIHSGCLAKINTQAPMDKVCVLSCGISTGLGATLNVAKPKKGSTVAVFGLGAVGLAAAEGARIAGASRIIGIDLNPKRFEEAKKFGVTEFLNPKDYDIPVQKVIADITNGGVDRSIECTGNINAMISAFECVHDGWGVAVLVGVPNKDAVFMTKPINLLNERTLKGTFFGNYKPRTDLPSVVEMYMNKKLELDKFITHRIPFSDINKAFELMLKGEGLRCIISMED 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1206 380 CDD alcohol_DH_plants 9 376 - -
Ssu2g1206 380 Pfam Zinc-binding dehydrogenase 206 334 IPR013149 -
Ssu2g1206 380 Gene3D - 19 370 - -
Ssu2g1206 380 SUPERFAMILY GroES-like 328 376 IPR011032 -
Ssu2g1206 380 Pfam Alcohol dehydrogenase GroES-like domain 37 161 IPR013154 -
Ssu2g1206 380 PANTHER ALCOHOL DEHYDROGENASE 4 378 - -
Ssu2g1206 380 SUPERFAMILY GroES-like 4 186 IPR011032 -
Ssu2g1206 380 PANTHER ALCOHOL DEHYDROGENASE 1-LIKE 4 378 - -
Ssu2g1206 380 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 169 343 IPR036291 -
Ssu2g1206 380 Gene3D - 183 321 - -
Ssu2g1206 380 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 69 83 IPR002328 GO:0008270|GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1206 Ssu-Chr2 53289500 53292598 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1206 37 370 Monolignol Biosynthesis Gene Families AT1G72680 24.189 2.29e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1206 K18857 - qsu:112034402 680.633