Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1178 ATGTCAGAATTCATTTCTGGTTTCTTTAACACGATTGCATCAAAATTTCTGGATCTGACTACTGGTGAAGCTCGTTACCTGTGTTGTTTCAAGACCATAGTTGAAGAGTATGAAAAGGAAAAGGGCAAGCTGAGAGCCAGGAGGAAGAGTGTACAAGAAAATGTGGATGAAGCAAAGAATAGAGCAGAAGAGATAGTGAATGATGTTACAGTTTGGATGCAGAATGCTGACAATCTCATCAATGAAGACACCAAAACGAAAAGGACTTGTTTTTCTGGATGGTGTCCGAATTGCATCTGGCAATATCACCGAGGAAAGGAATTGGTGGAAAAGATGTTGGAGATTTCTGAACTCAAGGGACTTAACTTTGAAAGTGTTGGACGCGCTGCTAAGCTTCCAGGCGTGGAGTACCACTCTTCAcaagattttattgaatttgagAGCAGAAGCTCCCAATGTAAACAACTTTTGGAAGCACTAAAAGATGAGCAAAACTATATGGTTGGATTGCATGGTATGGGGGGCACTGGTAAGACAACATTGGTGCAAAAAGTGGGTAAGGAAGTCAAAAGATCAAATCTGTTTGATGAAGTCATCTTCACTACTGTGTCCCATGCCCCTGATATTAGAAAGATTCAAGACAACATTGCAACCCCTTTAGGTCTGAAATTAGAGGAAGGGGATCAGTTGCAAAGAGCCAAAAAACTGTGGTCCAGATTAACTAATGGACAGAGGATACTTGTAATATTAGATGATGTGTGGGAGGAGCTCAAGTTTGAAGATATTGGGATCCCCTCCAGCGACAATCACAATTCATGCAGAGTTTTGCTTACTTCACGCAAGTTGAGTGTGTGCAATTCAATGAGCTGCCAAAGCACCATCGAGCTAGAGCTCTTATCTGAGGAGGATGCAAAGACTCTATTTGAAAAACATACAGGCTTAAGGGATGACTCATCCAAAAGTTTGAAGAAATTGGCACAGCAAATTGcaaatgaatgtaaaagatCACCTGTTGCGATTACAGCTATAGCAAAGAGTTTAAAACACCAGCCTCCAGAACTTTGGAAGGCAGCTTTAAAAAGCTTGAAAGAATTTAAACAAATCCGCAGTATTGATGAagatttaaagatttataaatgtTTCCAGGTAAGCTATGAAAATCTTAAGGATGAAAAGGCCAAGAAACTCTTCTTGTTATGTTCGTTATTCCCTGAAGATTATGAAATTTATGTGGAAGATTTAATCAGATATGGTAAAGGATTAGGCCTATTTGGGGAGGTTGACTCATATGAAGCAGCAAGGATAGAAATTCTTACAGCGAAAAGGAAACTCCTGGATGCTTGTTTATTATTGAAAGGTCAGGAAGGATGTGTCAAAATGCATGACCTGGTACGTGATGCAGCTCACTGGATAGCAAATTATGAGATTCAGGGGATTATGGGATCCAAAATTCATGCAACAGCAAAACAAAGTACCATAATGTATTTGTATCTCCACAACGTAAAAAGATTTTCCCTACCCAATCAATTGGATTGCACCAAACTTAAGATTCTAATAGTACTTTGCTTAGATAAAGAAGCTTCCGTGGATACACCACAAGCATTTTTTGAAGGAACCAAAGATCTAGAAGTTTTGGCTATAGCAAGGGCAGAAAACATTAGGGGAAAACCAAGTCTATCTTTGCCACGATCAATCGAAGTCTTAAAAATTCTCCGAACTCTATGCTTGAGAGGTTTTAATTTAGGTGATATTTCTGTTGTGCAAAAGCTAGACATACTTGAGACTCTTGAGTTGAGTGATTGTTCAATCAATAGGCTGCCAAATGGGATTGTGAAACTTGAAAAATTGAGGTTATTGAGCTTGACCCGGTGTGCAATTGAAAGGAATCCTTATGAAGTGATTGGTAGACTTTCTCAATTAGAGGAACTGTATATTATGAGAAGTCCTGACAGATTCAGATGGAAACTTGACAAAGAAGTTGTTGCTAGCATATTTGACAAAGATAACATAACCCCAGCATTGCAGAGATATCATATACAGATAGGACACGATTCCGGATTATATCTCTCAGTGGATGATTCCATATCAAGAGGTTTGtctattgaatattttgatccCAACTCAAATGCAACAATTAAGGACCTGGTTCAAAGAGCAGAGATTCTACACTTGAGGAGGATTCAGGGAGATTATACCACTGTAGCCCCACACTTGGTGGAAGCAACAGGAGACATGAATGACATGATCcatctcaagcttgagttttGTTCTAAGATAGAATGCCTTATTGATACTAGTTCATCTGCAGTAGGAAGTATCTTCTCCAAGCTGGTTAAGATAGAAGTCAGAGGCATGGATCATTTGACAGAACTGTGCCATGGTCCACCACCTTCTGACTTTCTTGGGAACCTAGAAGAGCTGAGTATACATTTGTGTCACCAATTGCATGGCAGATTATTTGTGGGAAACTTAAACCTCGGTAGACTTAAGGTGTTTCAAGTGGAATATTGTCGCATGTTGACATCTATGTTCACACCTTCCACTGCTGCAAGCCTAGTGCTGCTCGAAGAACTGATAATAGAGGGATGCAAGGAACTGAAAAACATAATAGCAATTGAGAGAGAAGACAACAGACAAGAGCAAATACTTCAGCATGATGatgataatcaaaatatttatggcTCAATGTTTCCCAAATTGAAATGTCTTGACATAAGAATGTGTGACCAATTAGAATTTATGATCACAGTATGTCCCAAAATGAATACAATAGGTGCCACAAGAAGGGAGTACCTTCAACCCCTCAGCACTGCTTATTGCCTTTCGAGGCAGTCGCTGATCCTGCGCCATGTCAGAGAAATGAAACTTAAAAActgtttaaaaacaaaactactGTTCACTCTATCTGTTGCTCAAACAATGTTGTTGGAAGAATTGAGAATTAAGGAATGCCATTCACTGAAGAACATTGTAACAGACGTCGGAGATGATCATGGTTGCATGACATGTGGCTCTGTCTTTCCAAGATTGAAATTGCTGAGTGTTTCAGATTGTAGCCAAATGCAATATATGTTAGAACAGGACAGTGAAGAACAGAATAATAACATTGAGATTCATATTGATCTACCAGATTTGGAACAACTCACTCTCTCAAATCTACCAAAACTAATCGACACCTGCTCAATAAAGTATAATGCCACATATCCATCTTTGAAGGAGTTTTGTTTGGACGGATGTCCTGAGTTTACCATCAAATCTGTCAGTGATTTCATGATACGTTTGGATACTAGACAACTGGCTGACAAAACCACTGAGTACTCAGGGGTGATTGTGAAGCATTTGCACACTTTAGAAAAGCTCTACATAGAGAACTCGAGCATTGAAGGGATCATTTGTCTTAAAGAACTTCCAGTCATTGATCAACATATGAGCTCAAGTTTAAAATCCCTGAAATTATACAATCTACATGAGCTAAGGAATACATTCATGGGTCCCAAACATTTTCTAAGCCTCCAAAATgtcaaatgtttaaaaattgtggGATGTAGTAAATTGAAAGTTATCTTCTCTGCATCTGTGTTGAGAAACCTACCACGGCTAATATATCTTGAAATCAAAGATTGTGAAGAATTACAAGAGATAATAGAAGAAGATGAGGAAAATCAAAGGCAATCAAATCCTCACTCTCAACGAGTATGCTTCCCACAGCTCATTGCACTTGTTATCAATCGTTGCCAAAGGTTGAAAAGTCTCATCTCTTTCTCCACATTCCATGAGTTTCCACAATTAGAGCTCATGATCATAAAAGAAGCCTCTCAGTTAGATATGTTTAGAAGGAAGCAAGGTGATGAGATTGCTCAAATGAAACTTTGGCTTCCTAAACTTAAGTATCTAGTGCTTATGCAACTGCCAAACCTTGCTGATTTGAGCCAACAAATGGAGTTGCAGACTGTGGCGTACAGTGTTGTGCATCATTGTCCAAAACTTTCTTTTGCTTCAACAACTACTCTTGAGAacttaaagaatatattagaaGatAGTAATATTGACCGCAATGTCCAGTGGGAGTTATTCGAAATACTTGAAACCATAATGGAAGAGACTGAAAATGAAAATCCAATGCCAGAAACCATTTCTCAATTACCGATGGTACAGGAAGTTCAAGACTTGCAGGTTCAATTTACATCCGAACGGGAGCTGCCTTGTGCACAGATTATTAATGAAGCAGATAAGGAAGTTGTTGCTGTACATGATTCAGAGACAGAAACTTCATCAACAGATTTAGAAGTGATAACATTGTCTTTTCCATGCCCTTCAGCTATCCATCAATATGAAACACCACAAGAGCACATGGAAGAAAAAGTGGTGAGCAAACAAAGTTCGATGGACCAACAGCAAGCATTCATggaaacaaatttcaaaatggAAATTGCTTGGGAAACTATTGTGCCATCGCCTTATGAACATAATagtacaaaagaaaaagtggaGCGAAGTCTTCTGGAGGATCCTGAAGCAGGTAACACAATCCAGTCAACAAACTCAGATCCTAGGAGCCCATCTCCAGGACCATTGTTTATTCCTTTACAAAAAGCATATTCACAGAGTATTAAAGGAAGTGTTCTAGAAGTTCCAACATCTGACAAAGCCAAGATATTAAATTCATCATTTCATTCAGGAGCACAGAACCAGCCACCGGCCCCATTAATTAATTCTGTGAGCAAAACATCTCTGCTGtcacCACAATTGTTCGAAAAACAGTCCATGGATGAACAAATTGATCTGGAACCAGGAGCAATTATAGAAAAGAAGAGGTCCAATGGAACTCACACAGCTGATGAACTTTACAATATTATGCAAAATGTTGAAGGCTCTACAAATGGAAGTGTTTCTGAAGTAGTGTTAAACAAAACTACATTTCCTATCTCATGTACCCTTCCAGAGTTGGGGGGGTCAATGTTTTCTCCAGTGGGTGATTTATTGAATGAAACATCTTCCCTGataTCTCCAATCTCTGAAGTCAATGTAACAAGTTCCACTTCAGTATTCAAGCAAAGAATGTCAAGGAGCCTGTTGGAAGAGCTATTCAACAATGTCAATGGTGATAGCTTTTCACCTGATACTGGAAACTTGGATTCTAGCATGATTCATAAGGCTGAACTTGTTCGTGAGCTTAAGACTGAACTAGCAGTGTATCTGAACGTGCCATTGGAGGCTATTATTGAAGCCAATGTGTTGGACAATGTAGTGAGGATTGTTAGTTCTTTGGCAAGGGAAACTGCAGATGCTTTCCAACAGAACATCCTCAAAGACTTCATAAATCGATTGAAGAGGTTCAAAGAAAGTGTTCCTAAAGCCATTAACACTTTGCAGTCAAGCTCTGAGTTCTTATCCAACTATGAGAAGCTGAATATGGAATTGAATACCAAACTGAATGAAGGacaagaaaaaattgaagactTGGAAACCAAACTTTCTGAAACCTCAGCAGAAGAATATAGTATTGAAATGGAGATTCAACAATTAGTTAATCGGAAAATTGAGATCCTTGACAAGAAGAACTTCCTTGCATCTCAACTTGACGAGTGCACTCAGGTAGTCTCTACGGATTATGAAAAATGGAAAGCTTTGGGAGaggaaataaaattatccaCTGATAGATGGCTAAAGTCCAAGGAAGATTTAGCTCATGCAAATGCTAGTTGGAAAATCTTCAAGGAGATTTTAGGTTTATGA 5736 0.3748 MSEFISGFFNTIASKFLDLTTGEARYLCCFKTIVEEYEKEKGKLRARRKSVQENVDEAKNRAEEIVNDVTVWMQNADNLINEDTKTKRTCFSGWCPNCIWQYHRGKELVEKMLEISELKGLNFESVGRAAKLPGVEYHSSQDFIEFESRSSQCKQLLEALKDEQNYMVGLHGMGGTGKTTLVQKVGKEVKRSNLFDEVIFTTVSHAPDIRKIQDNIATPLGLKLEEGDQLQRAKKLWSRLTNGQRILVILDDVWEELKFEDIGIPSSDNHNSCRVLLTSRKLSVCNSMSCQSTIELELLSEEDAKTLFEKHTGLRDDSSKSLKKLAQQIANECKRSPVAITAIAKSLKHQPPELWKAALKSLKEFKQIRSIDEDLKIYKCFQVSYENLKDEKAKKLFLLCSLFPEDYEIYVEDLIRYGKGLGLFGEVDSYEAARIEILTAKRKLLDACLLLKGQEGCVKMHDLVRDAAHWIANYEIQGIMGSKIHATAKQSTIMYLYLHNVKRFSLPNQLDCTKLKILIVLCLDKEASVDTPQAFFEGTKDLEVLAIARAENIRGKPSLSLPRSIEVLKILRTLCLRGFNLGDISVVQKLDILETLELSDCSINRLPNGIVKLEKLRLLSLTRCAIERNPYEVIGRLSQLEELYIMRSPDRFRWKLDKEVVASIFDKDNITPALQRYHIQIGHDSGLYLSVDDSISRGLSIEYFDPNSNATIKDLVQRAEILHLRRIQGDYTTVAPHLVEATGDMNDMIHLKLEFCSKIECLIDTSSSAVGSIFSKLVKIEVRGMDHLTELCHGPPPSDFLGNLEELSIHLCHQLHGRLFVGNLNLGRLKVFQVEYCRMLTSMFTPSTAASLVLLEELIIEGCKELKNIIAIEREDNRQEQILQHDDDNQNIYGSMFPKLKCLDIRMCDQLEFMITVCPKMNTIGATRREYLQPLSTAYCLSRQSLILRHVREMKLKNCLKTKLLFTLSVAQTMLLEELRIKECHSLKNIVTDVGDDHGCMTCGSVFPRLKLLSVSDCSQMQYMLEQDSEEQNNNIEIHIDLPDLEQLTLSNLPKLIDTCSIKYNATYPSLKEFCLDGCPEFTIKSVSDFMIRLDTRQLADKTTEYSGVIVKHLHTLEKLYIENSSIEGIICLKELPVIDQHMSSSLKSLKLYNLHELRNTFMGPKHFLSLQNVKCLKIVGCSKLKVIFSASVLRNLPRLIYLEIKDCEELQEIIEEDEENQRQSNPHSQRVCFPQLIALVINRCQRLKSLISFSTFHEFPQLELMIIKEASQLDMFRRKQGDEIAQMKLWLPKLKYLVLMQLPNLADLSQQMELQTVAYSVVHHCPKLSFASTTTLENLKNILEDSNIDRNVQWELFEILETIMEETENENPMPETISQLPMVQEVQDLQVQFTSERELPCAQIINEADKEVVAVHDSETETSSTDLEVITLSFPCPSAIHQYETPQEHMEEKVVSKQSSMDQQQAFMETNFKMEIAWETIVPSPYEHNSTKEKVERSLLEDPEAGNTIQSTNSDPRSPSPGPLFIPLQKAYSQSIKGSVLEVPTSDKAKILNSSFHSGAQNQPPAPLINSVSKTSLLSPQLFEKQSMDEQIDLEPGAIIEKKRSNGTHTADELYNIMQNVEGSTNGSVSEVVLNKTTFPISCTLPELGGSMFSPVGDLLNETSSLISPISEVNVTSSTSVFKQRMSRSLLEELFNNVNGDSFSPDTGNLDSSMIHKAELVRELKTELAVYLNVPLEAIIEANVLDNVVRIVSSLARETADAFQQNILKDFINRLKRFKESVPKAINTLQSSSEFLSNYEKLNMELNTKLNEGQEKIEDLETKLSETSAEEYSIEMEIQQLVNRKIEILDKKNFLASQLDECTQVVSTDYEKWKALGEEIKLSTDRWLKSKEDLAHANASWKIFKEILGL 1911
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1178 1911 Coils Coil 1797 1831 - -
Ssu2g1178 1911 Gene3D - 298 384 IPR042197 -
Ssu2g1178 1911 SUPERFAMILY RNI-like 1110 1309 - -
Ssu2g1178 1911 PRINTS Disease resistance protein signature 167 182 - -
Ssu2g1178 1911 PRINTS Disease resistance protein signature 588 604 - -
Ssu2g1178 1911 PRINTS Disease resistance protein signature 333 347 - -
Ssu2g1178 1911 PRINTS Disease resistance protein signature 240 254 - -
Ssu2g1178 1911 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 139 400 IPR027417 -
Ssu2g1178 1911 MobiDBLite consensus disorder prediction 1505 1520 - -
Ssu2g1178 1911 Gene3D - 130 296 IPR027417 -
Ssu2g1178 1911 MobiDBLite consensus disorder prediction 1489 1526 - -
Ssu2g1178 1911 PANTHER - 1064 1275 - -
Ssu2g1178 1911 Coils Coil 34 68 - -
Ssu2g1178 1911 Pfam NB-ARC domain 155 387 IPR002182 GO:0043531
Ssu2g1178 1911 PANTHER NBS-LRR TYPE DISEASE RESISTANCE PROTEIN 23 1083 - -
Ssu2g1178 1911 PANTHER - 23 1083 - -
Ssu2g1178 1911 SMART AAA_5 164 318 IPR003593 -
Ssu2g1178 1911 Gene3D Ribonuclease Inhibitor 1104 1356 IPR032675 -
Ssu2g1178 1911 Gene3D Ribonuclease Inhibitor 465 653 IPR032675 -
Ssu2g1178 1911 Gene3D Ribonuclease Inhibitor 696 1103 IPR032675 -
Ssu2g1178 1911 Gene3D - 385 464 IPR036388 -
Ssu2g1178 1911 PANTHER NBS-LRR TYPE DISEASE RESISTANCE PROTEIN 1064 1275 - -
Ssu2g1178 1911 SUPERFAMILY L domain-like 456 924 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1178 Ssu-Chr2 52631174 52640337 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1178 168 477 WRKY Transcription Factor Family AT5G45050 27.586 4.99e-11 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1178 - - mtr:MTR_1g031830 2639.76