Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1172 ATGGCAAGCACTCCCAGCATTCCATCGCACATGAAAGCTTGGGTTTATTCTGAATATGGGAACACAGAAGAGATTCTCAAATTTGATCCTAACGTACCTATACCAGACATCAAGGAAGACCAGGTGCTCATCAAGGTTGTAGCTGCAGCCCTTAATCCTGTAGATTATAAGAGGGCTCTTGGGTATTTCAAGAACAATGACTCTCCCTTACCAACTGTTCCGGGGTACGATGTTGCTGGTGTGGTGGTCAGAGTGGGAAGTCACGTGAGAAAATTCAAGGTTGGAGATGAAGTTTATGGTGATATCAATGAGCATGCTACGAATAGTCCAAAGACCATTGGGTCTTTGGCAGAGTATACTGCTGCTGAAGAGAAACTATTAGCTCACAAACCCTCCAATTTGAGCTTTATTGAAGCTGCTGGCCTTCCTTTAGCCATCATCACTGCCTATCAAGGACTTGAAAGAGTTGAGTTTTCTGCTGGCAAATCTATTCTTGTTCTGGGAGGTGCAGGAGGAGTTGGAAGCCTTATTATTCAGGTTGCCAAACATGTTTTTGGCGCATCAAGGATTGCGGCTACGTCTAGTACTGCAAAGTTGGAATTGTTGAGAAACTTGGGAGCAGACTTACCTATTGATTATACAAAGGAGAATTTTGAAGAACTGGCAGAAAAGTTTGATGTAGTGTACGATACAGTAGGCCAGAGTGAGAAGGCATTAAAGGCTGTTAAAGAAAGCGGCAAAGTTGTGACAATAGTATTAGTGCCACTTCCAACTCCTTCAGCTATCCCCTTCATACTCACTTCAGATGGTGCTGTGTTGGAGAAACTACAACCTCACTTAGAGAGTGGGAAGGTGAAGCCAGTATTGGATCCTAAGAGTCCCTCTCCATTTTCTCACACTGCGGAGGCATTTGCATATTTGAAGACTGAGAGAGCCATTGGGAAAGTAGTCATACATCCCATCCCATAA 969 0.4386 MASTPSIPSHMKAWVYSEYGNTEEILKFDPNVPIPDIKEDQVLIKVVAAALNPVDYKRALGYFKNNDSPLPTVPGYDVAGVVVRVGSHVRKFKVGDEVYGDINEHATNSPKTIGSLAEYTAAEEKLLAHKPSNLSFIEAAGLPLAIITAYQGLERVEFSAGKSILVLGGAGGVGSLIIQVAKHVFGASRIAATSSTAKLELLRNLGADLPIDYTKENFEELAEKFDVVYDTVGQSEKALKAVKESGKVVTIVLVPLPTPSAIPFILTSDGAVLEKLQPHLESGKVKPVLDPKSPSPFSHTAEAFAYLKTERAIGKVVIHPIP 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1172 322 PANTHER NADPH-DEPENDENT ALKENAL/ONE OXIDOREDUCTASE, CHLOROPLASTIC 1 322 IPR044626 GO:0016628
Ssu2g1172 322 SUPERFAMILY GroES-like 7 168 IPR011032 -
Ssu2g1172 322 Pfam Zinc-binding dehydrogenase 205 318 - -
Ssu2g1172 322 Gene3D - 153 269 - -
Ssu2g1172 322 SMART PKS_ER_names_mod 21 318 IPR020843 GO:0016491
Ssu2g1172 322 CDD MDR_like_2 11 318 - -
Ssu2g1172 322 PANTHER 2-METHYLENE-FURAN-3-ONE REDUCTASE-RELATED 1 322 - -
Ssu2g1172 322 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 134 270 IPR036291 -
Ssu2g1172 322 ProSitePatterns Quinone oxidoreductase / zeta-crystallin signature. 161 182 IPR002364 GO:0008270|GO:0016491
Ssu2g1172 322 Pfam Alcohol dehydrogenase GroES-like domain 40 107 IPR013154 -
Ssu2g1172 322 Gene3D - 18 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1172 Ssu-Chr2 52481744 52484206 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1172 40 266 Monolignol Biosynthesis Gene Families AT3G19450 24.809 2.17e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1172 K18980 - gmx:100791274 526.554