Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1171 ATGGCAAGCACTCCTAGCATTCCATCTCACATAAAAGCTTGGGTCTACTCTCAATATGGGGACATAGAAGAGGTTCTCAAGTTTGATGCTAATGTACCTACACCACACTTTAAGGAAGACCAAGTGCTCATCAAGGTTGTGGCTGCAGCCATTAATCCCGTAGATTATAAGAGGGCTCTTGGCCATTTCATGGACTCTGACTCTCCTTTACCCACTGCACCAGGGTACGATGTTGCTGGGGTGGTGGTCAGAGTGGGGAATCAAGTGAAGAAATTTCAGGTTGGAGATGAAGTTTATGGTGATATCAATGAGATTACTTTGGACCATCTAAAGACTATTGGTTCTTTAGCAGAATATACTGCTGTTGAAGAAAAAGTTTTGGCTCACAAACCCTCCAATTTGAGTTTTGTGGAAGCTGCTAGCCTCCCTTTGGCAATCATAACTGCTTATCAAGGACTTGAAACTGTTGAGTTCTCTGTTGGAAAATCTATACTTGTTCTGGGTGGTGCTGGTGGAGTTGGATCCCTTGTTATTCAGATCGCCAAGCACGTGTTTGGGGCATCCAAGATAGCAGCTACCGCTAGTACTGGCAAACTGGAATTACTGAGGAACTTAGGAGCAGACTTGCCTATTGATTACACAAAGGATAGTTTTGAAGAATCGCCAGAGAAGTTTGATGTGGTGTACGATGCAGTAGGGCAAAGTGAAAGGGCATTGAAGGCTGTTAAAGAAGGGGGTAAAGTTGTGACAACATTGCCACCTGGAACTCCACCAGCTATCCCCTTCTTGCTCACTTCAGATGGAGCTTTGTTAGAGAAACTAAGACCTTACTTGGAGAGTGGGAAGGTGAAGCCCATATTGGATCCCAAGAGTCCCTTTCCTTTCTCTCAGACCGTGGAGGCATTTTCCCACCTCAAGACTAACAGAGTCACTGGGAAAGTAGTCATACATCCAATCCCATAA 963 0.4476 MASTPSIPSHIKAWVYSQYGDIEEVLKFDANVPTPHFKEDQVLIKVVAAAINPVDYKRALGHFMDSDSPLPTAPGYDVAGVVVRVGNQVKKFQVGDEVYGDINEITLDHLKTIGSLAEYTAVEEKVLAHKPSNLSFVEAASLPLAIITAYQGLETVEFSVGKSILVLGGAGGVGSLVIQIAKHVFGASKIAATASTGKLELLRNLGADLPIDYTKDSFEESPEKFDVVYDAVGQSERALKAVKEGGKVVTTLPPGTPPAIPFLLTSDGALLEKLRPYLESGKVKPILDPKSPFPFSQTVEAFSHLKTNRVTGKVVIHPIP 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1171 320 Gene3D - 18 316 - -
Ssu2g1171 320 CDD MDR_like_2 12 316 - -
Ssu2g1171 320 Gene3D - 153 267 - -
Ssu2g1171 320 ProSitePatterns Quinone oxidoreductase / zeta-crystallin signature. 161 182 IPR002364 GO:0008270|GO:0016491
Ssu2g1171 320 SMART PKS_ER_names_mod 20 316 IPR020843 GO:0016491
Ssu2g1171 320 Pfam Zinc-binding dehydrogenase 205 316 - -
Ssu2g1171 320 PANTHER NADPH-DEPENDENT ALKENAL/ONE OXIDOREDUCTASE, CHLOROPLASTIC 1 320 IPR044626 GO:0016628
Ssu2g1171 320 SUPERFAMILY GroES-like 8 168 IPR011032 -
Ssu2g1171 320 PANTHER 2-METHYLENE-FURAN-3-ONE REDUCTASE-RELATED 1 320 - -
Ssu2g1171 320 Pfam Alcohol dehydrogenase GroES-like domain 40 101 IPR013154 -
Ssu2g1171 320 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 134 259 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1171 Ssu-Chr2 52472760 52474156 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1171 39 249 Monolignol Biosynthesis Gene Families AT4G37970 25.620 9.73e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1171 K18980 - gmx:100791274 501.516