Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1166 ATGGAAGTGATTGACACAGGAGCTCCCCTAAGTGTTCCAATAGGCAGAGCAACTCTAGGACGAAATTTCAACGTACTTGGAGAGCTTATTGATAATTTAGGTCCTCTAGATACTCGCACAACATCTCCCATTCATAGATCTGTGCTTGCCTTTATACAATTAGAtacaaaattatctatttttgaaACAAGAATAAAAGTAGTAGATATTTTAGCTCCTTATTGTCGTGGAGGAAAAATAGGACTTTTCAGTGGAGCTGGAATGGGCAAAATAGTACTCATTacagaattaattaataacattaccAAAGCTCATGGAGGTGTATCTGTATTTGGCGGAGTAGGTGAGCGTACTCGTGAAGGAAATGATCTTTATATGGAAATGAAAGAATTTGGAGTAattaatgaacaaaatattgcAGAATCAAAAGTAGCTCTAGTATACGGCCAAATGAATGAGTCGCCTGAAGCTTGTATAAGAGTTGGTTTAACCACCCTAACTATGGCGAAATATTTTCGAGATGTCAATGAACAAGATGTGCTTCTATTTTTGACAATGTCTTCTGATTCGTCCAAGCAGGATCTGAAGTATCTGCCTTATTGGGTCGAATGCCCTCTGCTTACTGAAATGGGTTCTTTACAAGAAAGAATTACTTCTACCAAAGAAGGGTCTATAACTTCGATTCAAGCAGTTTATGTACCtgcaaatgatttaattgatccTGCCCCTGCTACGACATTTGCACATTTAGATACTACTGTACTATCAAGAGGATTAGTGGCCAAAGGTATCTATCCAGTAGTAGATCCTTTAGATTCAACGTCAACTATGCTCCAACCTCGGATCGTTGGTGATGAACATTATGAGACTGCGCAAAGAGTTAAACAAACTTTACAACGTTACAAAGAACTTCAGGACATTATAGCTATCCTCGGCTTGGACGAATTATCTGAAGAAGATTGCTTAACCGTAGCAAGAGCTCGAAAAATTGAGCTTTTCCTATCACTGCCTTTTTTCGTAGCAGAAGTTTTTACCGGTTCGCTAGGGAAATATATAGGTTTAGTAGAAACAGTTAGAGGgtttaaattgattctttctGGAGAATTAGAAGGTCTTCCCGAACAAGCCTTTTATTTGGTAGGTAATATCGATGAAGCTACTACGAAGGCTACAAACTTAGAAATGGAGAACAAATTGAAGAAATGA 1206 0.3582 MEVIDTGAPLSVPIGRATLGRNFNVLGELIDNLGPLDTRTTSPIHRSVLAFIQLDTKLSIFETRIKVVDILAPYCRGGKIGLFSGAGMGKIVLITELINNITKAHGGVSVFGGVGERTREGNDLYMEMKEFGVINEQNIAESKVALVYGQMNESPEACIRVGLTTLTMAKYFRDVNEQDVLLFLTMSSDSSKQDLKYLPYWVECPLLTEMGSLQERITSTKEGSITSIQAVYVPANDLIDPAPATTFAHLDTTVLSRGLVAKGIYPVVDPLDSTSTMLQPRIVGDEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDCLTVARARKIELFLSLPFFVAEVFTGSLGKYIGLVETVRGFKLILSGELEGLPEQAFYLVGNIDEATTKATNLEMENKLKK 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1166 401 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 280 IPR027417 -
Ssu2g1166 401 PANTHER ATP SYNTHASE 1 397 - -
Ssu2g1166 401 Gene3D - 10 277 IPR027417 -
Ssu2g1166 401 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 206 275 IPR000194 GO:0005524
Ssu2g1166 401 TIGRFAM atpD: ATP synthase F1, beta subunit 1 393 IPR005722 GO:0015986|GO:0045261|GO:0046933
Ssu2g1166 401 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 65 188 IPR000194 GO:0005524
Ssu2g1166 401 Gene3D - 278 401 IPR024034 -
Ssu2g1166 401 PANTHER F0F1-TYPE ATP SYNTHASE, BETA SUBUNIT 1 397 - -
Ssu2g1166 401 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 278 393 - -
Ssu2g1166 401 CDD ATP-synt_F1_beta_C 282 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1166 Ssu-Chr2 52215219 52216447 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1166 6 331 Primary Pumps ATPases(2) AT1G20260 25.140 3.41e-14 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1166 K02112 - mnt:24286633 643.654