Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1149 ATGGCAGAGCGCGGAGGCGGCGACCGCGGCGGCTTCGGGGGTGGGTTCGGCGGGCGAGGCCGCGGGCGCGGCGGGGACAGGGGCCGCGGCGGCCGGCGTCGAGGCCCTCGCCGCGAGGAGGAGGAAAAGTGGGTCCCAGTAACCAAACTCGGGCGTCTCGTGAAAGAGGGAAAAATCCGAAGCCTGGAACAGATCTACCTCCACTCGCTCCCCATAAAGGAGCACCAGATCGTGGACACCCTCGTGGGCCCCACCCTCAAGGACGAGGTCATGAAAATCACACCGGTTCAGAAGCAGACCCGGGCCGGCCAGCGAACCCGGTTCAAGGCCTTCGTGGTCGTCGGCGACGGCAACGGCCACGTCGGACTCGGCGTTAAGTGCAGCAAGGAGGTGGCCACCGCCATTCGCGGCGCTATTATTCTGGCGAAGCTTTCCGTTATCCCCGTTAGGAGAGGGTACTGGGGGAACAAGATTGGGAAGCCCCACACCGTTCCGTGCAAGGTTACGGGGAAGTGCGGCTCCGTTACCGTTAGGATGGTTCCCGCGCCTCGGGGTTCGGGAATCGTGGCGGCTAGGGTTCCCAAGAAGGTGCTGCAGTTCGCGGGAATCGAGGATGTTTTTACTTCCTCCAGAGGATCCACCAAGACCCTCGGCAATTTCGTTAAGGCTACTTTTGAGTGCTTGTTGAAAACCTACGGTTTCTTGACACCGGACTTCTGGAGGGAAACTCGCTTTTCCAAATCTCCATTCCAAGAGTACACAGATCTATTGGCAAAGCCAACGGGAAAGCCTCTAATCTTGGAGGAGGAAAGGGTGGATGCTTGA 825 0.6024 MAERGGGDRGGFGGGFGGRGRGRGGDRGRGGRRRGPRREEEEKWVPVTKLGRLVKEGKIRSLEQIYLHSLPIKEHQIVDTLVGPTLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFWRETRFSKSPFQEYTDLLAKPTGKPLILEEERVDA 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1149 274 SUPERFAMILY dsRNA-binding domain-like 82 151 - -
Ssu2g1149 274 ProSiteProfiles S5 double stranded RNA-binding domain profile. 86 149 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Ssu2g1149 274 MobiDBLite consensus disorder prediction 1 42 - -
Ssu2g1149 274 PANTHER 40S RIBOSOMAL PROTEIN S2-1-RELATED 1 272 - -
Ssu2g1149 274 Pfam Ribosomal protein S5, N-terminal domain 86 150 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Ssu2g1149 274 PANTHER RIBOSOMAL S SUBUNIT 1 272 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Ssu2g1149 274 Pfam Ribosomal protein S5, C-terminal domain 170 241 IPR005324 GO:0003735|GO:0005840|GO:0006412
Ssu2g1149 274 Gene3D - 43 148 - -
Ssu2g1149 274 SUPERFAMILY Ribosomal protein S5 domain 2-like 162 242 IPR020568 -
Ssu2g1149 274 ProSitePatterns Ribosomal protein S5 signature. 103 135 IPR018192 -
Ssu2g1149 274 Gene3D - 149 241 IPR014721 -
Ssu2g1149 274 TIGRFAM uS5_euk_arch: ribosomal protein uS5 39 246 IPR005711 GO:0003735|GO:0006412|GO:0015935
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1149 Ssu-Chr2 51950552 51952657 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1149 40 262 Cytoplasmic Ribosomal Protein Gene Family AT3G57490 89.238 1.00e-148 415
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1149 K02981 - gmx:100820352 473.396