Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1145 ATGGTCTTGGCTTGCATCTTACGAAGATACTATTGCCACAAGGAGAATCCCACTTACCAAATgattgagaattttctgaagCATCATGGACACCTTTCAGCCAAAAGGTACAGTTATTTGGAGGTAAAGAAAATGACCAACTCCTTCAAAAACAAATTAGGCCAAGGAGGGTATGGTAGTGTATACAAAGGGAGGTTACAAAATGGAAGTCTTGTAGCAGTGaagattttaagtaaattaaaaggtGACGGAGAAGAATTCATCAATGAAGTTGCTAGTATTAGCATGACTTCTCATGTTAACATTGTTAGTTTACTGGGATTTTGCCTGGACGGCTCCAAAAGAGTTCTCATATACGAGTATATGCCCAATGGATCTCTTGAAAAGTTCATATACGAAGAGAAAGATCCTTTAAGGCTTAAACTCACATTGAATTGCAGAACTATGGACAATATTGCCATTGGTGTTGCTCAAGGATTGGAGTATTTGCACAAGGGTTGTAACACTAGAATCTTGCATTTTGACATTAAACCTCACAATATACTGCTAGATGAGTTGTTTTGCCCCAAAATATCAGATTTTGGGCTTGCTAAAATATGTCCAAGAGAAAAAAGTACTGTATCAATGATGGTTGCAAGGGGAACTGTAGGATATATTGCTCCTGAATTGTTCTGTAGAAATTTTGGTGGAGTGTCACATAAATCAGATGTCTACAGTTATGGAATGATGGTCTTGGAAATGCTTGGTGCAAGAGAGAATACCGGCCGAGTTGGGTTCTCAAGTGAAAATTACTTTCCACATTGGATTTACAACCATCTTGAATTAAATCAAGAGCTTCAATTGCGATgtattaaaaaccaaaatgataaagaaatggTGAGAAAAATGACTATAGTGAGTTTGTGGTGCATACAAACCGATCCTTCAAATCGACCTGCAATGAGTAAAGTGGTGGAAATGATGGAAGGAAGCATTAGCTCGTTGCAAGTTCCACCCAAACCTTTCCTTTCTTCATCCTTGGCATATTCATCCTCTGAATCACAAACATGTGAGACATCATAG 1062 0.3625 MVLACILRRYYCHKENPTYQMIENFLKHHGHLSAKRYSYLEVKKMTNSFKNKLGQGGYGSVYKGRLQNGSLVAVKILSKLKGDGEEFINEVASISMTSHVNIVSLLGFCLDGSKRVLIYEYMPNGSLEKFIYEEKDPLRLKLTLNCRTMDNIAIGVAQGLEYLHKGCNTRILHFDIKPHNILLDELFCPKISDFGLAKICPREKSTVSMMVARGTVGYIAPELFCRNFGGVSHKSDVYSYGMMVLEMLGARENTGRVGFSSENYFPHWIYNHLELNQELQLRCIKNQNDKEMVRKMTIVSLWCIQTDPSNRPAMSKVVEMMEGSISSLQVPPKPFLSSSLAYSSSESQTCETS 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1145 353 SMART serkin_6 47 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g1145 353 Gene3D Phosphorylase Kinase; domain 1 21 121 - -
Ssu2g1145 353 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 1 351 - -
Ssu2g1145 353 SUPERFAMILY Protein kinase-like (PK-like) 28 321 IPR011009 -
Ssu2g1145 353 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524
Ssu2g1145 353 ProSitePatterns Serine/Threonine protein kinases active-site signature. 171 183 IPR008271 GO:0004672|GO:0006468
Ssu2g1145 353 ProSiteProfiles Protein kinase domain profile. 47 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g1145 353 Pfam Protein kinase domain 50 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g1145 353 Gene3D Transferase(Phosphotransferase) domain 1 122 330 - -
Ssu2g1145 353 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 351 IPR045874 GO:0004672
Ssu2g1145 353 PIRSF ILK 25 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1145 Ssu-Chr2 51832455 51833516 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1145 35 337 Receptor kinase-like Gene Family AT4G18250 57.692 2.41e-123 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Ssu2g1145 Pkinase 3.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1145 - - gmx:100807312 646.351