Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1138 ATGGGTTCCGCGCTGGGTCGTGGAAGGCACACGCTTATtgcctctctctctttctctcttcttctcttctccgAAAACAAGACTTTGGATGAGATTCAGATTGCGGCCGACCCGAACGCGAAAATGGATCAGCTGAAGCCACGAGCCTCGTCCAAACCCGCTTCAGATTCAGCACCCCAACACGCAACTCTCACCTCTAACCGCTTCCGCAACTCCCAAGCTGTGAGggagagagagaaagagaggggaGAAGGGGAAAACGAGGATCCAAGTGCCGCACGAAGGGTGCTAAAGGCAGACCGCGAGAAACTCAGAAGGGATCGACTCAACGAACACTTTCAAGAGTTGGGAAACACGTTAGATCCTGATAGACCAAAGAATGAGAAGGCAACTATCCTCACCGAGACCATCCAGATGCTAAAGGACTTAACCACCGAAGTTAATAGGCTTAAAACGAAGCATAAGGCACTTTCTGAAGAGTCACGCGAACTAATGCAAGAAAAGAATGAACTCAGAGAAGAGAAGAcatctttaaaatttgatatagaaAATCTTAATGCCCAGTATCAGCAGAGAGTCAGAATCATGTTCCCATCATGGACTGCAATTGACCATTCTGTGGTCATTAGTCCACCTTACTCATATCCAGTTCCTATACCTATTCCTCCTGGTCCAATTTCCATCCACCCATCACTTCaaccttttcctttctttggaAATCAAAATCCTGGTCACATTCCTAATCCTTGTTCAATGTATGTCCCATATTCAACTCCAACTAACCCCCCAGTTGAGCCACCATCAGCTCTGTATGCTTCCACGTCCCACGTGTCTAGCCAAAAAGAATCCCGAAGCAAGTCACCAGGTCATAGAAGGTCTAGTAGTGATGCTGAAAGATGTAGTGAGTCTCATGATGTGGCCACAGAGCTTGAACTTAAGATGCCTGGATCATCATCAACACAACAGGATTGCTCTTCTGGAGGTAGGAAGGGCAAGCACTCAGTGATGAAGGATAGAATCATTATAGGTGGGAGCGCTTCAAGCCAGTATTCTTCATCTCAAGGACTTCAAGATAGCTCCAACAGTGTGGGTGACATCCCAAACAATGATAATTGA 1116 0.4283 MGSALGRGRHTLIASLSFSLLLFSENKTLDEIQIAADPNAKMDQLKPRASSKPASDSAPQHATLTSNRFRNSQAVREREKERGEGENEDPSAARRVLKADREKLRRDRLNEHFQELGNTLDPDRPKNEKATILTETIQMLKDLTTEVNRLKTKHKALSEESRELMQEKNELREEKTSLKFDIENLNAQYQQRVRIMFPSWTAIDHSVVISPPYSYPVPIPIPPGPISIHPSLQPFPFFGNQNPGHIPNPCSMYVPYSTPTNPPVEPPSALYASTSHVSSQKESRSKSPGHRRSSSDAERCSESHDVATELELKMPGSSSTQQDCSSGGRKGKHSVMKDRIIIGGSASSQYSSSQGLQDSSNSVGDIPNNDN 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1138 371 SMART finulus 99 149 IPR011598 GO:0046983
Ssu2g1138 371 MobiDBLite consensus disorder prediction 267 282 - -
Ssu2g1138 371 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 93 143 IPR011598 GO:0046983
Ssu2g1138 371 MobiDBLite consensus disorder prediction 344 371 - -
Ssu2g1138 371 MobiDBLite consensus disorder prediction 50 71 - -
Ssu2g1138 371 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 91 163 IPR036638 GO:0046983
Ssu2g1138 371 Pfam Helix-loop-helix DNA-binding domain 94 143 IPR011598 GO:0046983
Ssu2g1138 371 PANTHER TRANSCRIPTION FACTOR BHLH11 71 370 - -
Ssu2g1138 371 MobiDBLite consensus disorder prediction 283 309 - -
Ssu2g1138 371 MobiDBLite consensus disorder prediction 313 328 - -
Ssu2g1138 371 Gene3D - 92 194 IPR036638 GO:0046983
Ssu2g1138 371 Coils Coil 133 188 - -
Ssu2g1138 371 PANTHER TRANSCRIPTION FACTOR BHLH121 71 370 IPR044579 GO:0003700|GO:0055072
Ssu2g1138 371 MobiDBLite consensus disorder prediction 40 95 - -
Ssu2g1138 371 MobiDBLite consensus disorder prediction 72 95 - -
Ssu2g1138 371 CDD bHLH_AtILR3_like 98 172 - -
Ssu2g1138 371 MobiDBLite consensus disorder prediction 261 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1138 Ssu-Chr2 51703055 51706428 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1138 92 319 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G19860 56.277 1.82e-76 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu2g1138 HLH 1.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1138 - - gmx:100818281 482.641