Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1125 ATGAAATTGCAACTAGGGcggcaatttaaaaccttgagaGTCATGGTGAAAACCCATGTGAGCTTTGTTCTTTGgcttgttgtgttgttgttttgtgtgGGGTTTGAGCGTGCATGGTGTCAGGATGATGTTGTTGTGATGAACACGCTCAAGAAGGCCGTCACAGAACCCAATGATCTTCAATGGAGTGACGCAGATGTGTGTAAATGGAAACACGTTCAGTGCAGCACCATGAAGAGGGTCACTGCAATTCAAATTGGAGGACTGAGTCTGAAAGGTTCTCTGCCTAAGGAGCTGGCGCAGCTCTCAGCGTTGACACGTTTTGAGTGCATGAGCAATGGCTTCACTGGGCCATTCCCTTCCATGCCAAAGTCCCTTGAGGTTCTGATCATCCACAACAACAATTTCAGCTCCATGCCGGGTGATTTCTTCACCGGCATGACCAATTTGCAAGATGTGGACATTGGCTACAACCCTTTCCCAAAGTGGGAGATTCCTGTTGGCCTCAATGACTGTGTGTCTCTCAGGGATTTCTCTGCAGTCAGTGCTGGCCTTGTGGGGAAAATCCCAGATTTTTTTGGGAAAGATGGTCCCATGCCAGGTTTGGTTTCTCTTAGCTTGAGTTTTAATTCTCTTGATGGAGGGCTGCCTGCAGCCCTTTCTGGGAGTTCTATAGAGATCCTTTGGGTGAATGGTCAGGAAAGTAGTGGTAAACTCAATGGTACCCTTGATGTGTTGAAGAACATGACATCTTTGAAACAAATTTGGGTACATGGTAACTCATTCACAGGTCCTATACCGGACTTGTCAAACCATGATCAACTGTTTGATGTGAGTTTGAGGGATAACCAGTTGACTGGGGTTGTTCCACCCTCTCTCACTGCTCTTCCTGCTCTTAAAGTTGTGAATTTGACCAATAACCTTCTTCAAGGATCCCCTCCTGTGTTCAAACCTGGAGTCAAGGTTGATAATGATTTAGACAAGGGGCAGAATAGTTTTTGCACAAAGGAGCCTGGTAAGCCATGTAGTCCCCTTGTGGATGCTTTGCTTTCTGTCGTTGAACCTTTGGGGTATCCTCCAATATTTGCTGATAAATGGACGGGGAATGACCCTTGTCGTCAAAATTGGATGGGGATTATTTGCTCAAGTGGTAACATTTCCGCTATTAGTTTTCAGAGCATGAATCTCACTGGTAACATTTCTCCCAGTTTTGCCAGGCTTACATCTGTGACAGAGTTGCTTCTTGCTAACAATGGCCTCACTGGTACCATACCAAGTGAACTCATCAGTATGCCTCTTTTGAAAAAGCTGGATGTTtccaataataaattgtatGGTAAGGTGCCGTCTTTCAGCAGAGATGTAGTTCTTAATACTGATGGGAATCCTGATATTGGAAAGGATATTCCTCAAGCCCCGCCTGGCTCGAATTCTGGGGGTAAATCTGGAGGTGAAGGTAAGAAATATAACACTGGAGCAATTGTTGGCACTGTGGTGGGGGGTTTCAGTTTACTTGGTTTAGGTGCTCTGGTGTTTATTATGTATGTTAGAAAACATAAGCATGCTGGCAAAGTTCAAAGTCCTAGTGCAATAGTGGTACATCCTCGTCATTCTGGAGATGGAAATGGTCTGAAGATAAGTGTTGCAGCTTCAGGtgctagtggtggtggtggaggaggaggaggaactAGTGTATTTAGTCCAACTAGTAGTGTTCAACATGTGGAAGCTGGTAATATGGTGATTTCTATCCAAGTTTTGAGGGAAGTTACAAACAATTTCAGTGAAGGAAACATATTGGGGAGGGGTGGTTTTGGCACTGTATACAAAGGAGAATTGCATGATGGAACAAAGATTGCAGTGAAAAGGATGGAATCTGGAATGATGGGAGAGAAGGGGCTGAGTGAATTCGAGTCCGAAATTGCAGTACTTACTAAGGTTCGACACAGGCATTTGGTTGCACTCGAAGGCCATTGCTTGGATGGAAAGGAGAAGCTTCTTGTGTATGAATACATGCCCCAGGGCCCTCTTAGTAAACATTTATTTGAGTGGAAAGAGGAAGGGTTACAACCACTGGAATGGAAGAGAAGGCTTTCCATTGCCTTGGATGTTGCGAGAGGTGTTGAATACCTTCATGGTTTGGCCCAACAAATTTTTATCCATAGGGATCTAAAACCATCAAACATCTTACTTGGGGATGATATGCGGGCCAAAGTGTCAGACTTTGGATTGGTTCGGCTTGCTCCAGAAGGGAAGACCTCATTCGAGACTAGGCTTGCTGGAACTTTTGGATATTTGGCACCAGAGTATGCAGTCACCGGACGAGTTACAACGAAGGTTGATGTATACAGCTACGGGGTGATTCTCATGGAGATGATAACAGGAAGGAGAGCAATTGACAACAGCCAACCAGAAGAGAACATCCACCTTGTTACATGGTTCAGAAGGATGCTACTGAACAAAGACTCATTCGGAAAGCTCATTGACCCCACAATGGATGTTGATGAGGAGGCCTTTACAAGTTTTAGGACTGTGGCCGAGTTGGCCGGCCACTGCTGCGCAAGGGAGCCTTATCAGCGTCCCGACATGAGTCATGTGGTGAATGTGCTGGCACCTCTTGTTGAGATTTGGAAGCCTTCAGAAGCAGATGATGATGACATTTATGGCATTGACTTCGATATTACCTTACCTCAAGCACTCAGTAAGTGGAAGGCTATTGAAGGAAGGAGCACCTTGGATGTGtcatcatcctcttcatcaatgcTTACTAGTGGAGATAATACACAGTCTAGCATACCAACTAGGCCTTCTGGTTTTGCTGATTCCTTTACTTCCGCTGATGGAAGATGA 2850 0.4333 MKLQLGRQFKTLRVMVKTHVSFVLWLVVLLFCVGFERAWCQDDVVVMNTLKKAVTEPNDLQWSDADVCKWKHVQCSTMKRVTAIQIGGLSLKGSLPKELAQLSALTRFECMSNGFTGPFPSMPKSLEVLIIHNNNFSSMPGDFFTGMTNLQDVDIGYNPFPKWEIPVGLNDCVSLRDFSAVSAGLVGKIPDFFGKDGPMPGLVSLSLSFNSLDGGLPAALSGSSIEILWVNGQESSGKLNGTLDVLKNMTSLKQIWVHGNSFTGPIPDLSNHDQLFDVSLRDNQLTGVVPPSLTALPALKVVNLTNNLLQGSPPVFKPGVKVDNDLDKGQNSFCTKEPGKPCSPLVDALLSVVEPLGYPPIFADKWTGNDPCRQNWMGIICSSGNISAISFQSMNLTGNISPSFARLTSVTELLLANNGLTGTIPSELISMPLLKKLDVSNNKLYGKVPSFSRDVVLNTDGNPDIGKDIPQAPPGSNSGGKSGGEGKKYNTGAIVGTVVGGFSLLGLGALVFIMYVRKHKHAGKVQSPSAIVVHPRHSGDGNGLKISVAASGASGGGGGGGGTSVFSPTSSVQHVEAGNMVISIQVLREVTNNFSEGNILGRGGFGTVYKGELHDGTKIAVKRMESGMMGEKGLSEFESEIAVLTKVRHRHLVALEGHCLDGKEKLLVYEYMPQGPLSKHLFEWKEEGLQPLEWKRRLSIALDVARGVEYLHGLAQQIFIHRDLKPSNILLGDDMRAKVSDFGLVRLAPEGKTSFETRLAGTFGYLAPEYAVTGRVTTKVDVYSYGVILMEMITGRRAIDNSQPEENIHLVTWFRRMLLNKDSFGKLIDPTMDVDEEAFTSFRTVAELAGHCCAREPYQRPDMSHVVNVLAPLVEIWKPSEADDDDIYGIDFDITLPQALSKWKAIEGRSTLDVSSSSSSMLTSGDNTQSSIPTRPSGFADSFTSADGR 949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1125 949 Pfam Protein kinase domain 595 868 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g1125 949 CDD STKc_IRAK 600 873 - -
Ssu2g1125 949 SUPERFAMILY L domain-like 346 451 - -
Ssu2g1125 949 SUPERFAMILY Protein kinase-like (PK-like) 570 879 IPR011009 -
Ssu2g1125 949 SMART serkin_6 594 874 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g1125 949 MobiDBLite consensus disorder prediction 913 949 - -
Ssu2g1125 949 Gene3D Ribonuclease Inhibitor 40 340 IPR032675 -
Ssu2g1125 949 ProSitePatterns Serine/Threonine protein kinases active-site signature. 719 731 IPR008271 GO:0004672|GO:0006468
Ssu2g1125 949 SUPERFAMILY L domain-like 47 317 - -
Ssu2g1125 949 ProSiteProfiles Protein kinase domain profile. 594 874 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g1125 949 ProSitePatterns Protein kinases ATP-binding region signature. 600 622 IPR017441 GO:0005524
Ssu2g1125 949 Gene3D Transferase(Phosphotransferase) domain 1 672 889 - -
Ssu2g1125 949 PANTHER TRANSFERASE, PROTEIN KINASE RLK-PELLE-LRR-IX FAMILY-RELATED 18 949 - -
Ssu2g1125 949 Gene3D Ribonuclease Inhibitor 345 469 IPR032675 -
Ssu2g1125 949 SMART LRR_typ_2 199 223 IPR003591 -
Ssu2g1125 949 SMART LRR_typ_2 124 146 IPR003591 -
Ssu2g1125 949 SMART LRR_typ_2 296 318 IPR003591 -
Ssu2g1125 949 SMART LRR_typ_2 407 431 IPR003591 -
Ssu2g1125 949 SMART LRR_typ_2 147 172 IPR003591 -
Ssu2g1125 949 MobiDBLite consensus disorder prediction 462 484 - -
Ssu2g1125 949 Pfam Leucine rich repeat N-terminal domain 42 76 IPR013210 -
Ssu2g1125 949 Pfam Leucine rich repeat N-terminal domain 347 382 IPR013210 -
Ssu2g1125 949 Gene3D Phosphorylase Kinase; domain 1 564 671 - -
Ssu2g1125 949 PANTHER OSJNBA0070M12.3 PROTEIN 18 949 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1125 Ssu-Chr2 51339649 51343303 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1125 81 876 Receptor kinase-like Gene Family AT5G07280 30.492 1.45e-77 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Ssu2g1125 Pkinase 2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1125 - K00924 gmx:100776064 1559.66