Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1124 ATGTTTCTTCGTTGGTGCTGCTTTGTATGTCTCTTTCTCTCGGTGGGTTTGAGAGTAGAGGTAGCTAATGCTCAGTTTTATAGAAAAGTTGGAAATAAACACTTCCCTTACTGGTTAGTAGTGGTGGATCCATCAGGGCATGGAAACTTCTCTACCATACAATCTGCCATTGATTCAGTCCCTTCTGACAACAGGTATTGGGTTTCCATCAAAGTGAAGGCAGGTACCTACAGAGAAAAAGTGAAGATTCCATATGATAAGCCTTACATCATACTAAAAGGAGAGGGGAAGAGGAGAACTTTTGTTGAGTGGGATGATCATGATACAACCTCACAGAGCCCTACGTTCGCAGCCACGGCTGACAATATTGTTGTCAAATCCATGAGCTTTAGGaattcatacaacaatccaataaataataaacccAACGTGCCTGCTGTGGCTGCGATGGTAAGCGGCGACAAGTCTTACTTTTTCAGAGTTGGCTTCTTTGGTTTTCAAGACACTTTATGGGACGACACAGGAAGACATTACTACAAGCTTTGTACCATACAAGGTGCTGTTGATTTTATCTTTGGTGCAGGCCAGTCTTTATTTGAGAGGTGTGTCATATCTGTTCTTGGTGGGGCCCTAGATCCGGGCCTTCCCGGTTTTATTACAGCACAAGGGAGAATAAATTCAGAAGATTCAAATGGGTTTGTTTTCAATAACTGCCGTGTGATTGGCAATGGGTCAACTTACTTGGGGAGGCCTTGGAGAAGTTATGCTAGAGTTTTGTTCTACATGACCAATATGTCCAACATTATACAACCTAGTGGTTGGAATGCATGGAATTTTCCTAGATATGAGGGTCGCATAACCTTTGCAGAGTATGGCAATTTTGGACCAGGTTCTGACACGTCTAAGCGAGTGAGTTGGACTAAGAAGTTGGATTTAGAAACAATTGAGAATATGACAAGCACGAAGTTCATTGACACTGAAGGATGGCTTCAGCAGCAGCAACTGTTCTAA 1011 0.4164 MFLRWCCFVCLFLSVGLRVEVANAQFYRKVGNKHFPYWLVVVDPSGHGNFSTIQSAIDSVPSDNRYWVSIKVKAGTYREKVKIPYDKPYIILKGEGKRRTFVEWDDHDTTSQSPTFAATADNIVVKSMSFRNSYNNPINNKPNVPAVAAMVSGDKSYFFRVGFFGFQDTLWDDTGRHYYKLCTIQGAVDFIFGAGQSLFERCVISVLGGALDPGLPGFITAQGRINSEDSNGFVFNNCRVIGNGSTYLGRPWRSYARVLFYMTNMSNIIQPSGWNAWNFPRYEGRITFAEYGNFGPGSDTSKRVSWTKKLDLETIENMTSTKFIDTEGWLQQQQLF 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1124 336 ProSitePatterns Pectinesterase signature 2. 184 193 IPR033131 -
Ssu2g1124 336 PANTHER PECTINESTERASE 10-RELATED 14 334 - -
Ssu2g1124 336 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 14 334 - -
Ssu2g1124 336 Pfam Pectinesterase 40 326 IPR000070 GO:0030599|GO:0042545
Ssu2g1124 336 SUPERFAMILY Pectin lyase-like 38 331 IPR011050 -
Ssu2g1124 336 Gene3D - 39 336 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1124 Ssu-Chr2 51272486 51278323 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1124 40 278 Carbohydrate Esterase AT2G19150 46.667 2.71e-75 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1124 - - gmx:100819252 562.377