Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1122 ATGGGTCGTAGTTTGAAGATGCAGAGCCGCCATCCTGTGGCTTTGAGGTTGCATGATCAAATGGGGTCTAAAAGGAAGTACACTTTCATCCAGGCTCATAGAGCTTGGCTTCCAAAGTTTTTGGTGCTGTGGCTTCTGCTAATGGCTTTGATCAGTTGGTGCATCTATAGCAAAATGGATGATGACACTAAAGTCAGAAGGAAAGAGATGTTGGGTAGCCTCTGTGATCAAAGGGCAAGAATGTTGCAAGATCAGTTTAATGTTAGTGTTAACCATGTCCGTGCCCTTGCCATCCTGGTTTCAACCTTCCATTACTACAGATACCCTTCTGCCATTGACCAGGAAACCTTTGTTGAGTACACAGCTAGGACAGCATTTGAACGGCCATTGCTGAGTGGTGTGGCCTATGCACAAAGAGTTGTTAACTCTGAGAGGGAGAGATTTGAGAAAGAACATGGATGGGTTATAAAGACAATGGAAAGAGAGCCTTCACTGGTTAGAGATGAGTATGCGCCCGTGATATTCGCACAAGAAACTGTCTCATATCTTGAGTCTCTTGATATGATGTCTGGGGAGGAGgatcaagaaaacattttaaggGCTAGAGCAACTGGGAAAGCAGTTCTGACTAGCCCTTTCAGGCTGTTGGGTTCTCACCATCTTGGCGTGGTTTTGACATTCCCTGTGTACAAGTCTAAGCTCCCTCGAAAGCCAACAGTGGAAGAACGCATTGAAGCAACAGCAGGATATGTTGGAGGACCCTTTGATGTTGAGTCACTTGTAGAGAATTTACTTGGGCAACTTGCTGGTAACCAAGCAATTTTGGTGAATGTATATGATATCACAAACCATACTGTTCCGCTAATCATGTATGGCAACCAATATGAAGAAGGCGATACGTCTCTTGGCCATGAAAGCGAGCTTGATTTTGGAGATCCATACAGGAAACATCAGATGATATGTAGGTACCGTCAGAAGGCACTGACAAATTGGATAGCTCTTACCACAGCGTTCCTATTCTTTGTGATTCTTCTATTAGTGGGCTACATTTTATACGGTGCTGGGAATCATATTGTCAAAGTCGAAGATGATTTCCATGAAATGCAGGAATTAAAAGTCCGAGCAGAAGCAGCTGATGTTGCCAAGTCCCAGGTGATTTCCCTGGCATATTGTTAG 1176 0.4354 MGRSLKMQSRHPVALRLHDQMGSKRKYTFIQAHRAWLPKFLVLWLLLMALISWCIYSKMDDDTKVRRKEMLGSLCDQRARMLQDQFNVSVNHVRALAILVSTFHYYRYPSAIDQETFVEYTARTAFERPLLSGVAYAQRVVNSERERFEKEHGWVIKTMEREPSLVRDEYAPVIFAQETVSYLESLDMMSGEEDQENILRARATGKAVLTSPFRLLGSHHLGVVLTFPVYKSKLPRKPTVEERIEATAGYVGGPFDVESLVENLLGQLAGNQAILVNVYDITNHTVPLIMYGNQYEEGDTSLGHESELDFGDPYRKHQMICRYRQKALTNWIALTTAFLFFVILLLVGYILYGAGNHIVKVEDDFHEMQELKVRAEAADVAKSQVISLAYC 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1122 391 PANTHER TWO-COMPONENT HISTIDINE KINASE 22 386 - -
Ssu2g1122 391 SMART CHASE_2 108 293 IPR006189 -
Ssu2g1122 391 PANTHER HISTIDINE KINASE 4 22 386 - -
Ssu2g1122 391 Gene3D - 59 111 - -
Ssu2g1122 391 Pfam CHASE domain 111 291 IPR006189 -
Ssu2g1122 391 Gene3D CHASE domain 112 327 IPR042240 -
Ssu2g1122 391 ProSiteProfiles CHASE domain profile. 108 320 IPR006189 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1122 Ssu-Chr2 51249509 51251915 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1122 11 387 Histidine Kinase Gene Family AT2G01830 75.196 0.0 590
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1122 K14489 - gmx:100813204 707.212