Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1108 ATGACTGTGGATGAAGTGGAAAGTAGCTCTGAGTGGAGCAGAGAGCAGGATAAAGCATTTGAAAATGCATTGGCAAATCATCCGGAAGATGCTTCCGATCGATGGGAGAAGATTGCGGCTGATGTGCCGGGGAAGACTATAGAAGAAATCAAACAGCATTATGAGCTCTTGGTTGAAGATATTAAGCAGATCGAATCTGGTTGCGTGCCTATACCGTCTTATAATTCTTCTTCAGAAGGCTCAGCAAGCCATGCTAGTGATGAAGGGGCTGGCAAGAAGGGCAGCGGTCTTGGGCAATATAACAGTGAGTCTAATCATGGAAGTAAGGCTTCAAGATCTGATCAGGAACGACGAAAGGGTATTGCTTGGACAGAGGATGAACACAGGCAAGTTATTTCTTCTGGGCTTGGATAA 414 0.4541 MTVDEVESSSEWSREQDKAFENALANHPEDASDRWEKIAADVPGKTIEEIKQHYELLVEDIKQIESGCVPIPSYNSSSEGSASHASDEGAGKKGSGLGQYNSESNHGSKASRSDQERRKGIAWTEDEHRQVISSGLG 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1108 137 CDD SANT 11 58 IPR001005 -
Ssu2g1108 137 Pfam Myb-like DNA-binding domain 10 54 IPR001005 -
Ssu2g1108 137 PANTHER TRANSCRIPTION FACTOR KUA1 7 131 - -
Ssu2g1108 137 PANTHER HOMEODOMAIN-LIKE TRANSCRIPTIONAL REGULATOR-RELATED 7 131 - -
Ssu2g1108 137 SMART sant 8 60 IPR001005 -
Ssu2g1108 137 MobiDBLite consensus disorder prediction 1 37 - -
Ssu2g1108 137 MobiDBLite consensus disorder prediction 8 37 - -
Ssu2g1108 137 MobiDBLite consensus disorder prediction 109 126 - -
Ssu2g1108 137 MobiDBLite consensus disorder prediction 69 84 - -
Ssu2g1108 137 MobiDBLite consensus disorder prediction 68 137 - -
Ssu2g1108 137 ProSiteProfiles SANT domain profile. 7 62 IPR017884 -
Ssu2g1108 137 Gene3D - 4 71 - -
Ssu2g1108 137 ProSiteProfiles Myb-like domain profile. 4 58 IPR001005 -
Ssu2g1108 137 SUPERFAMILY Homeodomain-like 10 66 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1108 Ssu-Chr2 50921486 50930180 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Ssu2g1108 Myb_DNA-binding 7.1e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1108 - - ccaj:109792793 236.498