LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu2g1091	ATGGGTTCTGTTCCTGCAGAACTAAGCTTAGATTTGCGACCCACTTTTGTTCCCAAAACCATCACTGATTTTCTCTGCCACCTTTCCACCACCCCAAATGCTTCCCACAAGAAGTCCTTGCTCGATGACTTTGTCAACAGATTGGAACTCGAATTGGCCAAGATCCAAGCATTCAAACGCGAACTTCCTCTCTGCATGTTCCTCTTAAATGATGCAATTTCAGCTCTGAAGGTGGAATCAGCAAAATGCAGGGTGCAGAGGTCTGAGCCAGTGTTGGAAGAGTTCATTCCCCTGAAGAAAGAGTGCCATCAGAGGGAGGAAAGTGAGAAGGAGAAGGAATGCAGGGATAAGAGGAATTGGATGAGTTCTGTTCAGCTTTGGAACACTAATGATCATAATAATAGCAATGCATATGACTGTGACAAAAGACAAGGCTACAAACCAGAAAACAAGAATAATGGAGAAGAAAGACAATCTGTGGCCAAGGACTTGTTCCAATATGGTAGAAATAGAAATGGAGGGAGGGGGTTTGTTATGCCTTTGTCCGCTTACACTGCAATaaaggaagagaaggaagaTTATGTTGTTAATGGACTTTCTCTTCAAACACCTGGAACTGCAGTGGATAACGCAAGGGATGGATCTGGTGCCAGAAGCAGCTCTTGCAGGGTGATTTCCTCCACTCCTTCGCCCCTGCCTCAGCCGCTAAGTGCCCGGAAACAAAGGAGGTGCTGGTCACCGGAGTTGCATCATCGTTTTGTTAAGGCTTTAGAGGAGCTTGGAGGTTCTCAAGCAGCTACTCCAAAGCAAATTAGGGAACTCATGAGGGTTGATGGCCTGACCAACGATGAAGTAAAGAGTCATTTACAAAAATACCGACTTCATACACGGAGAGTTCCAATTGCTATAACTGCAACTTCTAATCGGTCTGCTGtagatcttggaggcttgtggATGCACAATGACTCCTTGAAGGGTAGCAGTTCTGACTCCTCTCAAGGCCCTTTCCAGTTAGCTACACAATCTGGGGAAGCGACATCCAGAAGAGTAGGTGACAACATGATAGATGATGATGTAAAATCGGAGTTATAA	1092	0.4368	MGSVPAELSLDLRPTFVPKTITDFLCHLSTTPNASHKKSLLDDFVNRLELELAKIQAFKRELPLCMFLLNDAISALKVESAKCRVQRSEPVLEEFIPLKKECHQREESEKEKECRDKRNWMSSVQLWNTNDHNNSNAYDCDKRQGYKPENKNNGEERQSVAKDLFQYGRNRNGGRGFVMPLSAYTAIKEEKEDYVVNGLSLQTPGTAVDNARDGSGARSSSCRVISSTPSPLPQPLSARKQRRCWSPELHHRFVKALEELGGSQAATPKQIRELMRVDGLTNDEVKSHLQKYRLHTRRVPIAITATSNRSAVDLGGLWMHNDSLKGSSSDSSQGPFQLATQSGEATSRRVGDNMIDDDVKSEL	363

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Ssu2g1091	363	PANTHER	MYB FAMILY TRANSCRIPTION FACTOR	7	362	IPR044787	GO:0003700\|GO:0006355
Ssu2g1091	363	MobiDBLite	consensus disorder prediction	205	238	-	-
Ssu2g1091	363	TIGRFAM	myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class	240	295	IPR006447	GO:0003677
Ssu2g1091	363	SUPERFAMILY	Homeodomain-like	238	298	IPR009057	-
Ssu2g1091	363	MobiDBLite	consensus disorder prediction	205	235	-	-
Ssu2g1091	363	Gene3D	-	239	297	-	-
Ssu2g1091	363	PANTHER	TRANSCRIPTION FACTOR HHO6	7	362	-	-
Ssu2g1091	363	MobiDBLite	consensus disorder prediction	136	158	-	-
Ssu2g1091	363	MobiDBLite	consensus disorder prediction	324	348	-	-
Ssu2g1091	363	MobiDBLite	consensus disorder prediction	324	363	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu2g1091	Ssu-Chr2	50437334	50439441	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu2g1091	6	319	G2-like Transcription Factor Family	AT2G03500	39.306	1.44e-56	189

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	GARP-G2-like	Ssu2g1091		Myb_DNA-binding	4.5e-07	CL0123

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu2g1091	-		-	gmx:100809323	563.533

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