Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1091 ATGGGTTCTGTTCCTGCAGAACTAAGCTTAGATTTGCGACCCACTTTTGTTCCCAAAACCATCACTGATTTTCTCTGCCACCTTTCCACCACCCCAAATGCTTCCCACAAGAAGTCCTTGCTCGATGACTTTGTCAACAGATTGGAACTCGAATTGGCCAAGATCCAAGCATTCAAACGCGAACTTCCTCTCTGCATGTTCCTCTTAAATGATGCAATTTCAGCTCTGAAGGTGGAATCAGCAAAATGCAGGGTGCAGAGGTCTGAGCCAGTGTTGGAAGAGTTCATTCCCCTGAAGAAAGAGTGCCATCAGAGGGAGGAAAGTGAGAAGGAGAAGGAATGCAGGGATAAGAGGAATTGGATGAGTTCTGTTCAGCTTTGGAACACTAATGATCATAATAATAGCAATGCATATGACTGTGACAAAAGACAAGGCTACAAACCAGAAAACAAGAATAATGGAGAAGAAAGACAATCTGTGGCCAAGGACTTGTTCCAATATGGTAGAAATAGAAATGGAGGGAGGGGGTTTGTTATGCCTTTGTCCGCTTACACTGCAATaaaggaagagaaggaagaTTATGTTGTTAATGGACTTTCTCTTCAAACACCTGGAACTGCAGTGGATAACGCAAGGGATGGATCTGGTGCCAGAAGCAGCTCTTGCAGGGTGATTTCCTCCACTCCTTCGCCCCTGCCTCAGCCGCTAAGTGCCCGGAAACAAAGGAGGTGCTGGTCACCGGAGTTGCATCATCGTTTTGTTAAGGCTTTAGAGGAGCTTGGAGGTTCTCAAGCAGCTACTCCAAAGCAAATTAGGGAACTCATGAGGGTTGATGGCCTGACCAACGATGAAGTAAAGAGTCATTTACAAAAATACCGACTTCATACACGGAGAGTTCCAATTGCTATAACTGCAACTTCTAATCGGTCTGCTGtagatcttggaggcttgtggATGCACAATGACTCCTTGAAGGGTAGCAGTTCTGACTCCTCTCAAGGCCCTTTCCAGTTAGCTACACAATCTGGGGAAGCGACATCCAGAAGAGTAGGTGACAACATGATAGATGATGATGTAAAATCGGAGTTATAA 1092 0.4368 MGSVPAELSLDLRPTFVPKTITDFLCHLSTTPNASHKKSLLDDFVNRLELELAKIQAFKRELPLCMFLLNDAISALKVESAKCRVQRSEPVLEEFIPLKKECHQREESEKEKECRDKRNWMSSVQLWNTNDHNNSNAYDCDKRQGYKPENKNNGEERQSVAKDLFQYGRNRNGGRGFVMPLSAYTAIKEEKEDYVVNGLSLQTPGTAVDNARDGSGARSSSCRVISSTPSPLPQPLSARKQRRCWSPELHHRFVKALEELGGSQAATPKQIRELMRVDGLTNDEVKSHLQKYRLHTRRVPIAITATSNRSAVDLGGLWMHNDSLKGSSSDSSQGPFQLATQSGEATSRRVGDNMIDDDVKSEL 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1091 363 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 7 362 IPR044787 GO:0003700|GO:0006355
Ssu2g1091 363 MobiDBLite consensus disorder prediction 205 238 - -
Ssu2g1091 363 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 240 295 IPR006447 GO:0003677
Ssu2g1091 363 SUPERFAMILY Homeodomain-like 238 298 IPR009057 -
Ssu2g1091 363 MobiDBLite consensus disorder prediction 205 235 - -
Ssu2g1091 363 Gene3D - 239 297 - -
Ssu2g1091 363 PANTHER TRANSCRIPTION FACTOR HHO6 7 362 - -
Ssu2g1091 363 MobiDBLite consensus disorder prediction 136 158 - -
Ssu2g1091 363 MobiDBLite consensus disorder prediction 324 348 - -
Ssu2g1091 363 MobiDBLite consensus disorder prediction 324 363 - -
Ssu2g1091 363 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 237 297 IPR017930 -
Ssu2g1091 363 Pfam Myb-like DNA-binding domain 242 293 IPR001005 -
Ssu2g1091 363 MobiDBLite consensus disorder prediction 134 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1091 Ssu-Chr2 50437334 50439441 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1091 6 319 G2-like Transcription Factor Family AT2G03500 39.306 1.44e-56 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Ssu2g1091 Myb_DNA-binding 4.5e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1091 - - gmx:100809323 563.533