Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1089 ATGGATCGTTCTGCTATGACTGTTGGGCCAGGAATGGATATGCCGATCATGCATGACAGTGACAGGTATGAGCTGGTGCGTGATATTGGGTCTGGGAATTTTGGGGTGGCAAGGCTCATGAGGGACAAGCACACTGAGGAGCTTGTTGCTGTCAAGTATATTGAGAGAGGTGATAAGATAGATGAAAATGTACGAAGGGAAATTATAAATCACAGGTCCCTGAGGCATCCCAATATTGTCAGGTTCAAGGAGGTCATATTAACCCCTACACATTTGGCTATTGTGATGGAATATGCTTCTGGAGGAGAGTTATTTGAGCGAATATGCAATGCCGGACGGTTTAGTGAAGATGAGGCACGCTTCTTCTTCCAACAACTTATATCAGGGGTTAGCTACTGTCATGCAATGCAAGTATGCCATCGTGACTTGAAGTTGGAGAACACATTGTTGGATGGTAGTCCGGCTCCTCGTTTGAAGATTTGTGATTTTGGGTATTCAAAGTCCTCAGTGCTACATTCACAACCAAAATCTACAGTTGGTACCCCTGCATACATTGCTCCTGAAGTTTTGCTTAAGAAAGAATATGATGGGAAGATTGCAGATGTGTGGTCTTGTGGGGTGACCTTATATGTCATGTTGGTGGGTGCATATCCTTTTGAGGATCCGGAGGAACCTAAAAATTTCCGGAAGACAATTCATAGGATTTTGAAAGTACAGTACTCAATTCCTGATTATGTTCATATATCTCCCGAGTGCTGTCATCTAATCTCAAGGATCTTTGTTGCAGACCCTGCACAGAGGATAAATATTCCTGAAATTCGAAACCATGAGTGGTTTCTGAAGAACCTTCCGGCCGATCTCATGGTCGAGAACACAATGAACAACCAGTTTGAGGAGCCTGATCAACCAATGCAGAGCATTGAAGAAATCATGCAGATAATCAGTGAGGCTACAATTCCTGCAGCTGGAACTCAGTCTCTGAACCAGTATCTTACCGGTAGCTTGGACATTGACGACGACATGGACGAGGACCTAGAGACGGATCCCGACCTCGATATTGATAGCAGTGGAGAAATAGTTTATGCAATGTAA 1092 0.4396 MDRSAMTVGPGMDMPIMHDSDRYELVRDIGSGNFGVARLMRDKHTEELVAVKYIERGDKIDENVRREIINHRSLRHPNIVRFKEVILTPTHLAIVMEYASGGELFERICNAGRFSEDEARFFFQQLISGVSYCHAMQVCHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLKKEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEPKNFRKTIHRILKVQYSIPDYVHISPECCHLISRIFVADPAQRINIPEIRNHEWFLKNLPADLMVENTMNNQFEEPDQPMQSIEEIMQIISEATIPAAGTQSLNQYLTGSLDIDDDMDEDLETDPDLDIDSSGEIVYAM 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1089 363 SUPERFAMILY Protein kinase-like (PK-like) 15 314 IPR011009 -
Ssu2g1089 363 PANTHER SERINE/THREONINE-PROTEIN KINASE SRK2E 14 358 - -
Ssu2g1089 363 Gene3D Transferase(Phosphotransferase) domain 1 99 287 - -
Ssu2g1089 363 Pfam Protein kinase domain 23 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g1089 363 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Ssu2g1089 363 ProSiteProfiles Protein kinase domain profile. 23 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g1089 363 ProSitePatterns Protein kinases ATP-binding region signature. 29 52 IPR017441 GO:0005524
Ssu2g1089 363 Gene3D Phosphorylase Kinase; domain 1 1 98 - -
Ssu2g1089 363 SMART serkin_6 23 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g1089 363 CDD STKc_SnRK2-3 22 278 - -
Ssu2g1089 363 PANTHER SERINE/THREONINE KINASE 14 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1089 Ssu-Chr2 50386220 50389927 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1089 16 282 CBL-interacting serine-threonine protein kinases AT4G24400 44.000 4.46e-69 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Ssu2g1089 Pkinase 3.8e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1089 K14498 - gmx:100804702 694.115