Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1078 ATGGCTCACCTTTGTTCAAACAAGGCCCTAGGTTGCTATCTCTTATTTTCCATTGTTGTGTCTTCTCTTTCAACCTTTTCTTATGCTCATTTTGGATTTGTCTTCTATGATTCACTTGAACCAATAACATACCCAGGAAAAGCACCAAGTCCAACACCTGAAGCTGATGCTATTGCACCAACTCCAGAAATTGAAGATGATACACAGCTTGCTCCACCACCAATTAGTAATACAACTCGTGCAAATGAAAGGCTCAAAAAGGCCTATGTTGCTCTTCAAGCATTGAAAGAGGCTATTCACTCTGACCCATTGAACACAACCGGTAATTGGGTTGGCGAAGATGTTTGCTCCTACAATGGTGTGTTTTGTGCTCCTGCCCTTGATGACACCACATTGAATGTGGTTGCTGGTGTTGATCTTAACAATGCAGACATTGCTGGGCACCTCCCAGAAGAGTTAGGACACTTGACAGATATGGCACTTTTCCACATTAACTCCAATAGATTCTGTGGAATTGTCCCAGAGACCTTGGAGAATCTCACACTTCTGCATGAGTTTGATATTAGCAACAATCGCTTTGTTGGTGGTTTTCCTTCTGTGGTCCTCAAATGGCCAAACTTGAAGTACTTGGACATCAGATACAATGACTTTGAAGGACCCTTACCTCCTGAGCTATTTGAGAAGGATCTTGATGCAATATTTTTGAACAACAATCGTTTCACATCTATTATCCCAGACACTCTAGGAAAATCCGGGGCCTCGGTGGTGACCTTTGCTAACAACGATTTCACAGGTTGCATTCCAAAGTCTATTGGGAACATGAAAAACATGAATGAGATTGTGTTCACGGGCAATGGCCTTGGAGGTTGCTTACCACAAGAGATTGGGTTGTTGGGAAAAGTGTCTGTTTTGGATGTTAGCAATAATGGGTTTATAGGGAGTCTTCCTAACTTGACAGGATTGAAGAATGTTGAGGTCATAGACATAGCACACAACAAGCTTAGCGGATATATGTCTAACACTGTTTGCCAACTTCCTTTGTTGAAGAACTTCACATTCTCTGACAACTACTTCAATGGGGAAGCTCAAGCTTGTGTGCCTTCTTCCAGTTCATTGGTGGCTTTGGATGACTCAAGCAATTGTCTATCAGGAAGGAAGAGTCAAAAGTCATCCAAGAAGTGCTTGCCAGTAATAACTCTCCCTGTGGACTGTAGCAAGCACTGTGGTGGAGGCCAAGGGAATAGCCATAGCCATGTCCCCTCAACACCAAAGCCAACTCCATCACCTTCACCTGTGACAGAACCACCCAAGTCTAGCCCCCCTAAACCTAAGACACCAAAAGCTGAGCCACCTCCAACCCCAAAGGCTGAGCCACCTCCAACACCAAAGGTTCAACCACCCCCAACACCAAAGGCTCAACCTCCTCCACTTGTCCACTCACCACCACCTCCAGTTCAGTCTCCTCCACCTCCTGTCCactcacctccaccaccacttcACTCCCCACCACCCCCTGTGTCCTCACCACCTCCACCAGTTCACTCCCCACCACCTCCACCTGTTAACTCTCCTCCTCCCCCTGTCCACTccccatcaccaccaccaccaccaccagtcAACTCTCCACCTCCACCAGTCAACTCCCCACCACCACCTGTTCACTCCCCACCACCACCAGTCACTCCCCACCACCACCAGTCAACTCCCCACCTCCACCAGTTcagtcaccaccaccaccagtcAACTCTCCACCACCACCAGCCCATTCTCCACCACCACCTGTTCAATCACCTCCTCCCCCAGTCCACTCCCCACCACCACCAGTTTACTCTCCTCCTCCACCAGTCCAAtccccaccaccaccaacatggGATGACGTTGTCCTCCCTCCACACTTCGGATCTGAATACAGATCACCGCCCCCACCAACAGTTACTGGATACTAAAAGAGAAGAAGTGCGCAATGCCATTAACATCTTTGTCTTTGTTCTTGCTGTAGTTCCAAAAAGATTTTTGTGCAAAGCTCAATTTCCCCTCTGTGAATTCTAA 2049 0.449 MAHLCSNKALGCYLLFSIVVSSLSTFSYAHFGFVFYDSLEPITYPGKAPSPTPEADAIAPTPEIEDDTQLAPPPISNTTRANERLKKAYVALQALKEAIHSDPLNTTGNWVGEDVCSYNGVFCAPALDDTTLNVVAGVDLNNADIAGHLPEELGHLTDMALFHINSNRFCGIVPETLENLTLLHEFDISNNRFVGGFPSVVLKWPNLKYLDIRYNDFEGPLPPELFEKDLDAIFLNNNRFTSIIPDTLGKSGASVVTFANNDFTGCIPKSIGNMKNMNEIVFTGNGLGGCLPQEIGLLGKVSVLDVSNNGFIGSLPNLTGLKNVEVIDIAHNKLSGYMSNTVCQLPLLKNFTFSDNYFNGEAQACVPSSSSLVALDDSSNCLSGRKSQKSSKKCLPVITLPVDCSKHCGGGQGNSHSHVPSTPKPTPSPSPVTEPPKSSPPKPKTPKAEPPPTPKAEPPPTPKVQPPPTPKAQPPPLVHSPPPPVQSPPPPVHSPPPPLHSPPPPVSSPPPPVHSPPPPPVNSPPPPVHSPSPPPPPPVNSPPPPVNSPPPPVHSPPPPVTPHHHQSTPHLHQFSHHHHQSTLHHHQPILHHHLFNHLLPQSTPHHHQFTLLLHQSNPHHHQHGMTLSSLHTSDLNTDHRPHQQLLDTKREEVRNAINIFVFVLAVVPKRFLCKAQFPLCEF 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1078 682 MobiDBLite consensus disorder prediction 410 587 - -
Ssu2g1078 682 Pfam Leucine rich repeat N-terminal domain 90 123 IPR013210 -
Ssu2g1078 682 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 10 443 - -
Ssu2g1078 682 Gene3D Ribonuclease Inhibitor 255 400 IPR032675 -
Ssu2g1078 682 SUPERFAMILY L domain-like 90 384 - -
Ssu2g1078 682 MobiDBLite consensus disorder prediction 569 587 - -
Ssu2g1078 682 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3 10 443 - -
Ssu2g1078 682 PRINTS Proline rich extensin signature 451 463 - -
Ssu2g1078 682 PRINTS Proline rich extensin signature 484 500 - -
Ssu2g1078 682 PRINTS Proline rich extensin signature 415 427 - -
Ssu2g1078 682 PRINTS Proline rich extensin signature 429 445 - -
Ssu2g1078 682 PRINTS Proline rich extensin signature 463 484 - -
Ssu2g1078 682 MobiDBLite consensus disorder prediction 422 564 - -
Ssu2g1078 682 Gene3D Ribonuclease Inhibitor 85 254 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1078 Ssu-Chr2 50040258 50042306 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1078 1 530 Trihelix Transcription Factor Family AT3G19020 49.141 5.29e-169 506
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1078 - - gsj:114419228 695.271