Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1076 ATGCCTCGCCCTTGTTTCCTCAAGCTTGTTCTCCCCACCACTCTCCAATCCAGACAACTGAGGATTCCAGATAATTTTCTGAGGAAATATGGCACCCATCTTTCTACAATTGCTACCCTTACTGTTCCTGATGGTAGTGTTTGGCATATAGGATTGAAGAAAGCAGACAACAGAATTTGGTTTGTTGATGGTTGGCAAGAATTTGTTCAACGCTACTCCGTTAGTGTTGGATACTTTTTGGTATTCATGTATGAAGGGAATTCTTCCTTCattgttcatatttttaatttgagtacttCTGAGGTGAATTATCAATCAGCCATGAGAAACCATAATGAAGGGCCTTGCTTTGCCAATTATCATCACATTTTTGATGAAATGGAAGATGTAGACTCCTTTGATTTGTCTGATTCGTCACCTCCGTACCTTACTTCTGGTGCATTGCAAAACAAGGTTTTTGCTGGATCTGTAGATCAACTGACACCTGGGAAGAGTCATACTCCAGCTTTGCAGAATTTGTTCAATGGCGGATCAAAACTCAATCGCATAAACTGGGGAGATGGTGGGAGTGCTTTTTCTTCAAAGGGTGCCAATTCACAAGGCAATCAGTCAACCAGAGACATAGGTGTTCAGTTTAATGCTGTTGAGTTTAAAAGGTCCACTGAAGAATTGAAATTGCGCTATTCTAATGAAGAAGCGGTTAataaaactgcaaaaaagaaGCGGAAATCAGAGCCCCATGGCGAGGAACACGCTGGTGAAAATGAAGAGGAGGCAGAAATGCGCTATAGATTTTATGAAAGTGCATCTGCAAGGAAAAGAACCGTGACAGcggaagaaagagaaagggcaATTAACGCAGCAAAAGCATTTGAACCAACTAATCCCTTCTGTCGAGTTGTCCTGCGACCCTCCTATTTATATAGGGGATGCATAATGTATTTGCCTTCCTGCTTTGCAGAAAAGAATCTGAATGGGGTTTCGGGGTTCATTAAACTTCAGTTGTCCAATGGTAGACAGTGGTCCGTTCGTTGCCTCTATCGGGGAGGTCGAGCAAAGTTAAGCCAAGGATGGTTTGAGTTCACATTGGAGAACAATTTGGGTGAAGGTGATGTCTGTGTGTTTGAGCTCCTTAGAATGAAGGAAGTTGTGCTGCAAGTTACGGTATTTCGCGTTACTGAGGATGCAGGGTTGTTGAATTCTCCTCCTATGCAGCAGCAGAGCCAAAATATGAGCCACACTAAACTTTTGAACCCTCACTTGCAGCATCGCGTCAGTACAACCAAATTGGTTAGAAACTAG 1302 0.4101 MPRPCFLKLVLPTTLQSRQLRIPDNFLRKYGTHLSTIATLTVPDGSVWHIGLKKADNRIWFVDGWQEFVQRYSVSVGYFLVFMYEGNSSFIVHIFNLSTSEVNYQSAMRNHNEGPCFANYHHIFDEMEDVDSFDLSDSSPPYLTSGALQNKVFAGSVDQLTPGKSHTPALQNLFNGGSKLNRINWGDGGSAFSSKGANSQGNQSTRDIGVQFNAVEFKRSTEELKLRYSNEEAVNKTAKKKRKSEPHGEEHAGENEEEAEMRYRFYESASARKRTVTAEERERAINAAKAFEPTNPFCRVVLRPSYLYRGCIMYLPSCFAEKNLNGVSGFIKLQLSNGRQWSVRCLYRGGRAKLSQGWFEFTLENNLGEGDVCVFELLRMKEVVLQVTVFRVTEDAGLLNSPPMQQQSQNMSHTKLLNPHLQHRVSTTKLVRN 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1076 433 CDD B3_DNA 296 391 IPR003340 GO:0003677
Ssu2g1076 433 Pfam B3 DNA binding domain 9 96 IPR003340 GO:0003677
Ssu2g1076 433 Pfam B3 DNA binding domain 301 391 IPR003340 GO:0003677
Ssu2g1076 433 SMART B3_2 298 393 IPR003340 GO:0003677
Ssu2g1076 433 SMART B3_2 6 98 IPR003340 GO:0003677
Ssu2g1076 433 PANTHER B3 DOMAIN-CONTAINING 1 423 - -
Ssu2g1076 433 ProSiteProfiles B3 DNA-binding domain profile. 5 98 IPR003340 GO:0003677
Ssu2g1076 433 MobiDBLite consensus disorder prediction 232 259 - -
Ssu2g1076 433 SUPERFAMILY DNA-binding pseudobarrel domain 291 392 IPR015300 -
Ssu2g1076 433 ProSiteProfiles B3 DNA-binding domain profile. 298 393 IPR003340 GO:0003677
Ssu2g1076 433 Gene3D - 1 99 IPR015300 -
Ssu2g1076 433 Gene3D - 275 395 IPR015300 -
Ssu2g1076 433 CDD B3_DNA 4 96 IPR003340 GO:0003677
Ssu2g1076 433 PANTHER B3 DOMAIN TRANSCRIPTION FACTOR VRN1-LIKE PROTEIN 1 423 - -
Ssu2g1076 433 SUPERFAMILY DNA-binding pseudobarrel domain 3 97 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1076 Ssu-Chr2 49996203 50002311 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1076 1 397 B3 DNA Binding Superfamily AT3G18990 49.510 3.27e-127 371
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Ssu2g1076 B3 4.9e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1076 - - gmx:100806715 786.178