Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1044 ATGGGTAGTTGTGGAAGGGAAGGTTTAGTGAGGCAGTATATAAGATCAAAAGTCCCTCGTTTAAGATGGACCCCTGAATTGCATCGTTGCTTTGTTTATGCCATTGAGACTCTTGGAGGTCATCACAAGGCTACTCCTAAGCTTGTTCTTCAATTGATGGATGTTAAAGGGCTCACAATTTCACACGTCAAAAGCCATCTGCAGATGTACAGAAGCATGAAAGGTGACTCCTGCAGACAAGATAGGACTTCCACCCAACATAGAAAACAATCTTTTCAGGAGCATGATGATGGATGTGTTGATGAAGTGAGTGATGTTGGTTTTCAATCTTGCTTAAAATCCATTGGAAAAGAATCTAATTCCCTCTCCAGCTGCAGTAATTTATCCCCTAAAAGAGCAAGAATCGAGAAGACAAGTTTACTCTCTGGAATCCTGCAATGCAGCCAAAGAATATGTGAAGCAGTTCCAAATCCATACACTACTTTTTATGGTTACCTGCAGACCATGGCTGAGCAGAAGGGAATAAAGAAGATTTGTGTTGGTTCAATATGGCAGACTCAACCCCTTTCCACAACTTTTCCTATGCTCCCAAAGCAAGAATCAGATTTGCTCCAGGTTGCcaaattaaatgacaaacaaCCTTTGAATGAAGGTGGGAACACTTGGAGGACACGAGCAGAGGATGAAGACATAGGAGGTTGTGGGTTGTCATTGTCGATCTCATTGCCACAACCCCATCCTTCCTCTCCGAAAAGTAATCCTTCTTCAGTCACTGAGACCAGTGAGGCATTTTCATTATGCCCTGAGTTTAGCAACAGCTACATGGGCTGTTCTAGTTCTTCCAATGTCCCAAACACAATTAATTTGGATCTATCTTTGGCTATTTGA 888 0.4167 MGSCGREGLVRQYIRSKVPRLRWTPELHRCFVYAIETLGGHHKATPKLVLQLMDVKGLTISHVKSHLQMYRSMKGDSCRQDRTSTQHRKQSFQEHDDGCVDEVSDVGFQSCLKSIGKESNSLSSCSNLSPKRARIEKTSLLSGILQCSQRICEAVPNPYTTFYGYLQTMAEQKGIKKICVGSIWQTQPLSTTFPMLPKQESDLLQVAKLNDKQPLNEGGNTWRTRAEDEDIGGCGLSLSISLPQPHPSSPKSNPSSVTETSEAFSLCPEFSNSYMGCSSSSNVPNTINLDLSLAI 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1044 295 Gene3D - 18 74 - -
Ssu2g1044 295 SUPERFAMILY Homeodomain-like 17 73 IPR009057 -
Ssu2g1044 295 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 19 73 IPR006447 GO:0003677
Ssu2g1044 295 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 75 IPR017930 -
Ssu2g1044 295 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 1 295 IPR044848 GO:0003700
Ssu2g1044 295 Pfam Myb-like DNA-binding domain 21 71 IPR001005 -
Ssu2g1044 295 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 1 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1044 Ssu-Chr2 48966805 48971482 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1044 1 71 G2-like Transcription Factor Family AT1G14600 73.684 4.34e-33 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Ssu2g1044 Myb_DNA-binding 1.6e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1044 - - gmx:100810994 493.041