Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1043 ATGGCAGCACCTTTTTCTGCATCATCGCTCTTTGGAATCAGAGAAGAGGATCAGAATCAGATGAAGCAGCAGCATTCCTCAAcaccatcatcatcaacaacTCCAGCTGCACCACCCcagaagaaaaggagaaaccAACCAGGAACACCATATCCAGATGCGGAGGTGATAGCACTATCCCCAAAGACGCTAATGGCAACAAACAGGTTTATATGTGAGGTTTGCAATAAAGGGTTCCAAAGGGAGCAAAACCTACAGCTGCACAGAAGAGGACACAACCTGCCTTGGAAGCTAAAGCAGAAGACTACAAAAGAGCCAAAGAGAAAGGTTTATCTGTGTCCCGAGCCCACATGTGTTCACCATGACCCTTCAAGGGCTCTTGGAGACCTCACTGGCATTAAGAAACACTACTCTCGCAAGCACGGTGAGAAGAAGTGGAAGTGTGACAAGTGCTCCAAGAAATATGCTGTTCAATCAGATTGGAAAGCACACTCTAAAACCTGTGGCACCAGAGAGTACAGATGTGACTGTGGCACCCCCTTCTCCAGACGAGACAGTTTCATCACCCACAGAGCCTTTTGTGATGCACTGGCACAAGAAAGTGCAAGAGAGCCACCCACCTTGAGCAGTACTTCCATTGGCAACCAACTATATGGAAATAGTAACAACATGTCCTTAGGCTTACCTCAAATGGGTCCACAGATCCCCTCCATCCAAGACCAAAACGCCCAATCTAGTGACCTATTGCGTTTTGGCGGTGCAAGGACTGATCAATTTGACCACATTCTCCCACCAACCCTTGCCTCACCCTTCAGACCTTCCTCACACCAAACCATGCAAACCCCTCCATTCTTCATGTCAGAatcaaaccaaaaccaaaactacCATGACCACCAACAAGGGTTAATCTCAAACAAGCCATTCCAAGGACTAATACAATTGTCTGAcctcagcaacaacaacaacaacatcaacactACCCCTTCTGGCCCCAACCTCTTCAACCAGTTCAACACTACTGAAGGGTCCAATTTCTTCTCAGAAAGTACCATAATTGGCACTGATCACCAAACAAGCTCCACCACTGCCCCTTCTCTCTTCAGCACCTCTCTTCAAAACAGCACCACCAACTTTTCTCACATGTCCGCAACCGCACTGCTTCAGAAAGCTGCTCAAATGGGTGCTGCAAGTTccagcaacaacaacatcagTGCCTCCTCTCTTCTCAGAAGCTTAGCATCCAAATCTGATCACAGGCCACTCGGTGGTGCAAACTATGGAACCATCTTCAACAACAGCTTGCAAGACATGATGAACATTCCCGGGTTTGAAGCATACGATCATGGCATGAACAAAGAACCAAAACTGAGTGTTGGAGGCTCTGATAGGCTCACAAGGGACTTTCTAGGAGttacacaacaacaacaactacgTGGGTTGAACATGAGTTCTTTGGAAGCAGAGACAAACAATGCTGCGCCGTCAGGTCAATCTTTCGGACGTGGAGGGAACTTTCAGTGA 1521 0.4366 MAAPFSASSLFGIREEDQNQMKQQHSSTPSSSTTPAAPPQKKRRNQPGTPYPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTPFSRRDSFITHRAFCDALAQESAREPPTLSSTSIGNQLYGNSNNMSLGLPQMGPQIPSIQDQNAQSSDLLRFGGARTDQFDHILPPTLASPFRPSSHQTMQTPPFFMSESNQNQNYHDHQQGLISNKPFQGLIQLSDLSNNNNNINTTPSGPNLFNQFNTTEGSNFFSESTIIGTDHQTSSTTAPSLFSTSLQNSTTNFSHMSATALLQKAAQMGAASSSNNNISASSLLRSLASKSDHRPLGGANYGTIFNNSLQDMMNIPGFEAYDHGMNKEPKLSVGGSDRLTRDFLGVTQQQQLRGLNMSSLEAETNNAAPSGQSFGRGGNFQ 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1043 506 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 1 430 - -
Ssu2g1043 506 ProSiteProfiles Zinc finger C2H2 type domain profile. 70 92 IPR013087 -
Ssu2g1043 506 SUPERFAMILY beta-beta-alpha zinc fingers 69 166 IPR036236 -
Ssu2g1043 506 MobiDBLite consensus disorder prediction 12 40 - -
Ssu2g1043 506 ProSitePatterns Zinc finger C2H2 type domain signature. 72 92 IPR013087 -
Ssu2g1043 506 Pfam Zinc-finger double-stranded RNA-binding 70 92 IPR022755 -
Ssu2g1043 506 Gene3D Classic Zinc Finger 124 203 - -
Ssu2g1043 506 SMART c2h2final6 111 141 IPR013087 -
Ssu2g1043 506 SMART c2h2final6 70 92 IPR013087 -
Ssu2g1043 506 SMART c2h2final6 146 166 IPR013087 -
Ssu2g1043 506 MobiDBLite consensus disorder prediction 1 54 - -
Ssu2g1043 506 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 430 - -
Ssu2g1043 506 Gene3D Classic Zinc Finger 53 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1043 Ssu-Chr2 48810849 48815202 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1043 10 473 IDZ Gene Family AT2G02070 48.868 4.17e-127 381
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu2g1043 zf-C2H2_jaz 3e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1043 K25870 - gmx:100807789 753.051
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1043 2 48810849 48815202 Ssu2g1043 2 48810849 48815202 ECH