Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1042 ATGGCTGCTGCTTCCTCATCCACACCCTTCTTGGGAATTAGACAAGAAAATCAAAGCCAGGTTACACAACAACACCAATCCTCCACAGTTGCTTCCTCAACTGCAACTACTCCACCCACAGTGCCTCAAAAGAAAAGGAGGAATCAACCCGGAACACCATATCCAGATGCGGAGGTGATAGCACTATCTCCAAAGACGCTAATGGCAACAAACAGGTTTATATGTGAGGTTTGCAATAAAGGGTTCCAAAGGGAGCAAAACCTACAGCTGCACAGAAGAGGACACAACCTGCCTTGGAAGCTAAAGCAGAAGACTACAAAAGAGCCAAAGAGAAAGGTTTATCTGTGTCCCGAGCCCACATGTGTTCACCATGACCCTTCAAGGGCTCTTGGAGACCTCACTGGCATTAAGAAACACTACTCTCGCAAGCACGGTGAGAAGAAGTGGAAGTGTGACAAGTGCTCCAAGAAATATGCTGTTCAATCAGATTGGAAAGCACACTCCAAAACCTGTGGCACCAGGGAGTATAGATGTGACTGTGGCACCCTCTTCTCCAGGCGTGACAGTTTCATCACTCATAGGGCCTTTTGTGATGCGCTAGCGCATGAGAGTGCAAGACACCCTTCCAACCTGAATCCATTGGGAACTCATCTGTATGGCACAAACCACATGAGCCTAGGCCTTGGTGCCCAACTTCAGAACCAAGCAGCCACTAACAGCATATTGAGCCTTGGAAGTGCACCAAAGTTTGAGCATTTAATCTCACCTAATCTGCACCATTCATCATCATTTGGAGTGCAGTCACCACCCCACTCATCTTTCTTCATGACTGACCCAAACCAAGCATTTCAAGACCTCCAATCTCAGCAACAAGGACCCTTATTCTCAAGCAAGCAATTCCATGGTCTTATGCAACTCCCTGATCTTCAAGGAACCACCAATAACTCCTCTTCTGCATCATCAGTATCTGCTTCAGCTAATAACACCAATCTCTTTAACCTCAGCTTCTTTCCTAATACCAATAGCAGTGGCAGCATAATCAATGATCACCAATTCAACAACATAAGTGGAGGTAATAACCAAGGAACAGCAACACACTACAGTACTAATAGCCCTGTAAGTAACCAAGTTGGTTCAGGCTTATCTTCACTCTTTGGCAATTCATCAGTGCAACAAGATAACATGTCCCCTCATATGTCCGCCACTGCATTGCTTCAGAAAGCTGCTCAAATGggttcaaccacaaccaccaaTGGTTCTTCCTCTCTACTAAGAGGAACAGAAGAATTAGGTATAAGATCAAACATGGAAAATGAGCACAGTAACCATCTACGTGGCTTGATGAACTCTCTTGCCAATGGAAACACTTCCATATTTGGCAATGTGAAAGGGAACGAAAACAACCTTGGTCAGTTTCACAACGTGGTAGAGGAGCCAAAAAAGTTGTCACAGAATCTTGGTGTGTGCTTCGGAGGGTCTGATAAGTTGACCTTAGATTTTTTGGGTGTTGGAGGAATGGTGAGGAACATGAACAGTGGTGGGTTTTCACAAAGAGAGCAACAACATTCCATGGGAACTATGAGCCCCTTGGATCCTAAATTGGAATCAGCACAAGCAAACCAACACTTTGGAACCTCAACACTCTAA 1647 0.4451 MAAASSSTPFLGIRQENQSQVTQQHQSSTVASSTATTPPTVPQKKRRNQPGTPYPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAHESARHPSNLNPLGTHLYGTNHMSLGLGAQLQNQAATNSILSLGSAPKFEHLISPNLHHSSSFGVQSPPHSSFFMTDPNQAFQDLQSQQQGPLFSSKQFHGLMQLPDLQGTTNNSSSASSVSASANNTNLFNLSFFPNTNSSGSIINDHQFNNISGGNNQGTATHYSTNSPVSNQVGSGLSSLFGNSSVQQDNMSPHMSATALLQKAAQMGSTTTTNGSSSLLRGTEELGIRSNMENEHSNHLRGLMNSLANGNTSIFGNVKGNENNLGQFHNVVEEPKKLSQNLGVCFGGSDKLTLDFLGVGGMVRNMNSGGFSQREQQHSMGTMSPLDPKLESAQANQHFGTSTL 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1042 548 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 520 - -
Ssu2g1042 548 SUPERFAMILY beta-beta-alpha zinc fingers 72 169 IPR036236 -
Ssu2g1042 548 SMART c2h2final6 73 95 IPR013087 -
Ssu2g1042 548 SMART c2h2final6 149 169 IPR013087 -
Ssu2g1042 548 SMART c2h2final6 114 144 IPR013087 -
Ssu2g1042 548 MobiDBLite consensus disorder prediction 1 57 - -
Ssu2g1042 548 Gene3D Classic Zinc Finger 56 121 - -
Ssu2g1042 548 ProSiteProfiles Zinc finger C2H2 type domain profile. 73 95 IPR013087 -
Ssu2g1042 548 MobiDBLite consensus disorder prediction 1 47 - -
Ssu2g1042 548 Pfam Zinc-finger double-stranded RNA-binding 73 95 IPR022755 -
Ssu2g1042 548 Gene3D Classic Zinc Finger 127 206 - -
Ssu2g1042 548 MobiDBLite consensus disorder prediction 512 548 - -
Ssu2g1042 548 ProSitePatterns Zinc finger C2H2 type domain signature. 75 95 IPR013087 -
Ssu2g1042 548 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 1 520 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1042 Ssu-Chr2 48794852 48798928 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1042 10 515 IDZ Gene Family AT2G02070 47.469 9.23e-133 397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu2g1042 zf-C2H2_jaz 3.3e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1042 K25870 - gmx:100806198 872.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1042 2 48794852 48798928 Ssu2g1042 2 48794852 48798928 ECH