Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1041 ATGAAGCCCGAGTTGTACGAAATCTCGGACGACGAGTGGGAGAACCACTCCTTCAAACCCTCCCGAGTCCTCAAACGACCTCGCACTTCGTCTCCTTCTCCGCCACCTATCGAGTCCTTCGCTTACGCCGCTAAGGTCGACGTTTCCAGCGAAAACGACAGCGACTGCGTTGAAATCACTCCGAATTTCCGGGACAACCTCGACGACCTGGAGGACGCCGACGTGGACGACGCCGGTGCTGGTTGCGCGGCGGCGTCCCGCGGCCGGCGGTTCACGATCGACGAGGACGATGACGAGGACGAGGACAACGACGGGGAGAACGGAGAAAGGGAGAGACACGTGGCGGAATTGTACGAGGTAGAGTCGAgcgaggaggaggaggaggaggaggaggaagaggttGAAGAAGAATTGAACGAAGACGATGTGGTTGGTAGGGCTTTGCACAAGTGCGCGAGAATCTCCGCGGAGTTGAAAGGGGAACTCTTTGGCTCTTCGGGGACCGCGTGCGAGAGGTATTCGGAGGTGGAGTCTTCGTCAGTGAGGATCGTGACTCAGGAGGATGTTGACGTTGCGTGCGGGTCTGAGGATTCGGATTTTCAGCCCCTGCTCAAGCCGTATCAGTTGGTTGGTGTCAATTTTTTGCTTCTGCTGTATCGGAAGGGGATTGGAGGAGCCATATTGGCAGACGAAATGGGCCTTGGCAAGACAGTTCAGGCCATCACCTATTTAACTTTGTTGAAACACTTGCACAATGATTCTGGTCCGCATCTTATAGTATGTCCTGCTTCTGTTTTGGAAAACTGGGAAAGAGAACTGAAAAGGTGGTGTCCTTCCTTTTCTGTTCTTCAATATCATGGAGCTGGACGTGCAGCATACTGCAAGGAGTTGAACTCCCTGTCGAAGGCGGGATTGCCTCCTCCATTTAATGTTCTTCTTGTGTGTTATTCACTTTTTGAACGGCACAGTGCACAGCAGAAAGATGATCGCAAAATCCTGAAGCGGTGGAGGTGGAGCTGTGTGCTGATGGACGAGGCACATGCTTTGAAGGACAAAAATAGCTTTAGGTGGAAAAATCTGATGTCTGTTGCACGAAACGCAAACCAACGCTTGATGCTGACAGGGACACCACTTCAGAATGATCTACATGAGTTATGGTCGTTGTTGGAGTTTATGATGCCTGATATTTTTGCTTCTGAAGATGTTGACCTTAAAAAGTTACTAAATGCAGAAGATAGAGATTTAATTGGTCGTATGAAGTCCATCTTAGGGCCATTTATTTTGCGGCGACTGAAATCTGATGTGATGCAACAACTTGTTCCGAAAATACAGCAGGTTGAATATGTTATAATGGAAAAGCAGCAGGAAACTGCTTACAAGGAAGCCATCGAAGAGTATCGTGCTGTTTCACAAGCTCGGATGGCAAAATGTTCTGAtcttaattcaaaaaatgttcTTGAAGTTCTTCCTCGACGACagataaataactattttgttcAGTTCCGCAAGATTGCAAACCATCCCTTGTTAATAAGGCGGATCTACAATGATGAGGATGTCATTCGCTTTGCCAGGAAGCTACATCCAATAGGTGCTTTTGGTTTTGAATGTACTTTGGACAGAGTTATAGGGGAACTTAAAAATTACAACGACTTCTCTATTCACCGGcTTTTACTTCATTATGGTGTCAATGATAGAAAGGGGATCCTTCCGGATAAGCATGTTATGCTTTCTGCAAAATGTCGGGCCTTAGCAGAACTTCTTCCTTCACTAAAGGAGGGTGGTCATCGAGCCTTGATCTTTAGTCAATGGACTTCAATGCTTGACATATTGGAGTGGACTTTGGATGTCATTGGATTGACCTATAAACGGCTTGATGGAAGTACACAGGTAGCGGAGAGGCAAACAATAGTTGATACATTCAATAACGATACTTCAATATTTGCGTGCTTACTTTCCACAAGAGCTGGTGGACAGGGCTTAAACTTAACAGGAGCTGATACAGTTGTAATTCATGACATGGATTTTAACCCACAGATTGATAGACAAGCAGAAGATCGTTGCCATCGAATTGGTCAAACAAAGCCTGTAACCATATATCgGCTGGTGACAAAGGGAacagttgatgaaaatgtgtaCGAGATTGCAAAAAGGAAGCTAGTATTAGATGCTGCTGTTCTCGAGTCCATGGAGGAGATTAATGAAGGTGACATGCCCGAGAAGACCATGGGAGAGATATTGTCCGCaattttattgagttaa 2262 0.4469 MKPELYEISDDEWENHSFKPSRVLKRPRTSSPSPPPIESFAYAAKVDVSSENDSDCVEITPNFRDNLDDLEDADVDDAGAGCAAASRGRRFTIDEDDDEDEDNDGENGERERHVAELYEVESSEEEEEEEEEEVEEELNEDDVVGRALHKCARISAELKGELFGSSGTACERYSEVESSSVRIVTQEDVDVACGSEDSDFQPLLKPYQLVGVNFLLLLYRKGIGGAILADEMGLGKTVQAITYLTLLKHLHNDSGPHLIVCPASVLENWERELKRWCPSFSVLQYHGAGRAAYCKELNSLSKAGLPPPFNVLLVCYSLFERHSAQQKDDRKILKRWRWSCVLMDEAHALKDKNSFRWKNLMSVARNANQRLMLTGTPLQNDLHELWSLLEFMMPDIFASEDVDLKKLLNAEDRDLIGRMKSILGPFILRRLKSDVMQQLVPKIQQVEYVIMEKQQETAYKEAIEEYRAVSQARMAKCSDLNSKNVLEVLPRRQINNYFVQFRKIANHPLLIRRIYNDEDVIRFARKLHPIGAFGFECTLDRVIGELKNYNDFSIHRLLLHYGVNDRKGILPDKHVMLSAKCRALAELLPSLKEGGHRALIFSQWTSMLDILEWTLDVIGLTYKRLDGSTQVAERQTIVDTFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCHRIGQTKPVTIYRLVTKGTVDENVYEIAKRKLVLDAAVLESMEEINEGDMPEKTMGEILSAILLS 753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1041 753 Gene3D - 183 455 IPR038718 -
Ssu2g1041 753 MobiDBLite consensus disorder prediction 1 37 - -
Ssu2g1041 753 CDD DEXHc_Snf 204 397 - -
Ssu2g1041 753 SMART helicmild6 609 692 IPR001650 -
Ssu2g1041 753 CDD SF2_C_SNF 570 703 - -
Ssu2g1041 753 MobiDBLite consensus disorder prediction 74 141 - -
Ssu2g1041 753 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 217 395 IPR014001 -
Ssu2g1041 753 Pfam SNF2-related domain 224 510 IPR000330 GO:0005524|GO:0140658
Ssu2g1041 753 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 583 750 IPR001650 -
Ssu2g1041 753 MobiDBLite consensus disorder prediction 1 21 - -
Ssu2g1041 753 PANTHER SNF2/RAD54 HELICASE FAMILY 69 751 - -
Ssu2g1041 753 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 336 734 IPR027417 -
Ssu2g1041 753 Coils Coil 115 144 - -
Ssu2g1041 753 Gene3D - 567 748 IPR027417 -
Ssu2g1041 753 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY A CONTAINING DEAD/H BOX 1 69 751 - -
Ssu2g1041 753 MobiDBLite consensus disorder prediction 120 140 - -
Ssu2g1041 753 SMART ultradead3 200 405 IPR014001 -
Ssu2g1041 753 Pfam Helicase conserved C-terminal domain 580 692 IPR001650 -
Ssu2g1041 753 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 197 430 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1041 Ssu-Chr2 48751166 48768838 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1041 225 731 RAD5 or RAD16-like Gene Family AT5G22750 26.837 9.31e-47 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Ssu2g1041 SNF2_N 4e-56 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1041 K14439 - gmx:100806323 1307.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1041 2 48751166 48768838 Ssu2g1041 2 48751166 48768838 ECH