Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1040 ATGGGGAGGATCAAACCACAAGCTCTGTTACAGCAAAGCAAAAGGAAGAAGGGGCCTTCTCACATAAGTGCCACCACTATTATATTCTATACATTGATTCTTGTCATGCTTGTGTTTTTCCTGTTTGCTACATACAGACATTGGTCCAACAGGACAAGACATCAACCAGAGAGCTACATATCAGTCTCTGAGGATGAAAATACATTTGTGGAATCCAAAAAATCTGATCTACCTGGATATGCTGTTGTAATTACCTCTAAAGGTTCTATTATAGTAGAACTTTACAAGGAAAGTGCTCCTGAAGTTGTTGATGAATTCATAGATTTATGtcaAAAAGGGCACTTCAAGGGGATGCTTTTTCACCAAGTAATTAAGCACTATGTGATTCAGGCAGGTTATAACAAAGGGCCTGGAGCTACTGAAGATTGGAACCTGTTAGGAAAGAAATATGCCAGTATGAGACATGAAACATTCATGATTGGAACTTCAAAGGGAAAATACTTTAACAAAGGATTTGATCTTTTCATCACGACTGCACCAATACCAGATCTAAATGAAAAGCTTATTGTATTTGGCCGAGTCATCAAGGGAGAGGATGTTGTTCAGGAAATTGAAGAAGTGGATACAGATGAACATTACCGACCAAAAATTTCTATTGGGATACTTGATGTGGCTCTTAGACAAATGATGTGA 693 0.3795 MGRIKPQALLQQSKRKKGPSHISATTIIFYTLILVMLVFFLFATYRHWSNRTRHQPESYISVSEDENTFVESKKSDLPGYAVVITSKGSIIVELYKESAPEVVDEFIDLCQKGHFKGMLFHQVIKHYVIQAGYNKGPGATEDWNLLGKKYASMRHETFMIGTSKGKYFNKGFDLFITTAPIPDLNEKLIVFGRVIKGEDVVQEIEEVDTDEHYRPKISIGILDVALRQMM 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1040 230 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 88 226 IPR002130 GO:0000413|GO:0003755
Ssu2g1040 230 SUPERFAMILY Cyclophilin-like 77 225 IPR029000 -
Ssu2g1040 230 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP21-4 1 230 - -
Ssu2g1040 230 CDD cyclophilin 85 223 - -
Ssu2g1040 230 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 83 224 IPR002130 GO:0000413|GO:0003755
Ssu2g1040 230 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 120 132 IPR002130 GO:0000413|GO:0003755
Ssu2g1040 230 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 186 201 IPR002130 GO:0000413|GO:0003755
Ssu2g1040 230 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 94 109 IPR002130 GO:0000413|GO:0003755
Ssu2g1040 230 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 173 185 IPR002130 GO:0000413|GO:0003755
Ssu2g1040 230 Gene3D - 65 229 IPR029000 -
Ssu2g1040 230 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 1 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1040 Ssu-Chr2 48707020 48711168 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1040 79 226 U-box Gene Family AT5G67530 27.273 8.85e-15 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1040 - - gmx:100796043 429.483